GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 00:25:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:15658432-15658453
GAGAGAGAGAGTTTAAACTTGGAAAAGAGA15658432AGGCTAACAGAAATGTGGTTTGTGAGAAATAAAGTTCTTGGACTTTAAATAG
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:15623270-15623291
GAGAGAGAGAGTTTAAACTTGGAAAAGAGA15623270AGGCTAACAGAAATGTGGTTTGTGAGAAATAAAGTTCTTGTTCTTTAAATAG
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:15646526-15646547
GAGAGAGAGAGTTTAAACTTGGAAAAGAGA15646526AGGCTAACAGAAATGTGGTTTGTGAGAAATAAAGTTCTTGTTCTTTAAATAG
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:15775901-15775922
GAGAGAGAGAGTTTAAACTTGGAAAAGAGA15775901AGGCTAACAGAAATGTGGTTTGTGAGAAATAAAGTTCTTGTTCTTTAAATAG
Malus domestica genome assembly, chromosome: 7.
OU696683.1:15273615-15273636
GAGAGAGAGAGTTTAAACTTGGAAAAGAGA15273615AGGCTAACAGAAATGTGGTTTGTGAGAAATAAAGTTCTTGTTCTTTAAATAG
Malus domestica genome assembly, chromosome: 7.
OU744548.1:16275761-16275782
GAGAGAGAGAGTTTAAACTTGGAAAAGAGA16275761AGGCTAACAGAAATGTGGTTTGTGAGAAATAAAGTTCTTGTTCTTTAAATAG
Malus domestica genome assembly, chromosome: 7.
OU744959.1:15261943-15261964
GAGAGAGAGAGTTTAAACTTGGAAAAGAGA15261943AGGCTAACAGAAATGTGGTTTGTGAGAAATAAAGTTCTTGTTCTTTAAATAG
Malus domestica genome assembly, chromosome: 7.
OU744997.1:15674703-15674724
GAGAGAGAGAGTTTAAACTTGGAAAAGAGA15674703AGGCTAACAGAAATGTGGTTTGTGAGAAATAAAGTTCTTGTTCTTTAAATAG
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:21498004-21498025
CTATTTAAAGTCCAAGAACTTTATTTCTCA21498004CAAACCACATTTCTGTTAGCCTTCTCTTTTCCAAGTTTAAACTCTCTCTCTC
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:20504988-20505009
CTATTTAAAGAACAAGAACTTTATTTCTCA20504988CAAACCACATTTCTGTTAGCCTTCTCTTTTCCAAGTTTAAACTCTCTCTCTC
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:15001883-15001904
CTATTTAAAGTCCAAGAACTTTATTTCTCA15001883CAAACCACATTTCTGTTAGCCTTCTCTTTTCCAAGTTTAAACTCTCTCTCTC
Malus x robusta genome assembly, chromosome: 10.
OY720334.1:19661502-19661523
CTATTTAAAGTCCAAGAACTTTATTTCTCA19661502CAAACCACATTTCTGTTAGCCTTCTCTTTTCCAAGTTTAAACTCTCTCTCTC
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:19142838-19142859
TATTTAAAAGTCCAAGAACTTTATTTCTCA19142838CAAACCACATTTCTGTTAGCCTTCTCTTCTCCAAGTTTAAACTCTCTCTCTC
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:11078005-11078026
CTATTTAAAGTCCAAGAACTTTATTTCTCA11078005CAAACCACATTTCTGTTAGCCTTCTCTTCTCCACGTTTAAACTCTCTTTCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGGCTAACAGAAATGTGGTTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGCTAACAGAAATGTGGTTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.098 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=AGGCTAACAGAAATGTGGTTTG&k=0&no_gap=0&offset=0&limit=50
0.122 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=CAAACCACATTTCTGTTAGCCT&k=0&no_gap=0&offset=0&limit=42
0.126 | 0.004 | cgi_end;

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