GGGenome | Results

2025-04-09 10:37:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

SlLH03c08g04f1 squirrel heart library 1 Callospermophilus lateralis cDNA clone 08g04 5', mRNA sequence.
CO734304.1:398-417

TCTTCAGGTGTTCCAGTGTCAGGGTCCTTG398AGGCTTGATGAACTGTTGCCCAGTGAAGGCTTCATACAGAGCAATATGAG

KS23001A04 KS23 Capsicum annuum cDNA, mRNA sequence.
GD111026.1:75-94

CTTCAGTACTGTGCATGTTAATCAATCATC75AGGCTTGATGAACTGTTGCCTTTCATATGCCAGTTTATCTATCTATCACT

KS24043G04 KS24 Capsicum annuum cDNA, mRNA sequence.
GD121888.1:62-81

CTTCAGTACTGTGCATGTTAATCAATCATC62AGGCTTGATGAACTGTTGCCTTTCATATGCCAGTTTATCTATCTATCACT

Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 6.
CP124714.1:171913072-171913091

TTTCAGTACTGTGCATGTTAATCAATCATC171913072AGGCTTGATGAACTGTTGCCTTTCATATGCCAGTTTATCACTTCATGTGT

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 12.
CP124720.1:262288048-262288067

CTTCAGTACTGTGCATGTTAATCAATCATC262288048AGGCTTGATGAACTGTTGCCTTTCATATGCCAGTTTATCTATCTATCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.303 | 0.295 | search_plus_done; http://172.18.8.135:50400/match?q=AGGCTTGATGAACTGTTGCC&k=0&no_gap=0&offset=0&limit=50
0.332 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=GGCAACAGTTCATCAAGCCT&k=0&no_gap=0&offset=0&limit=45
0.332 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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