GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 21:04:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Rattus norvegicus 1 BAC CH230-148J18 (Children's Hospital Oakland Research Institute) complete sequence.
AC106606.5:44632-44649
CTTCTTTAAACAACTGCTTCCATGAGATTA44632AGGCTTGGAAATGATGCTGCTGTGTTTTGAGGACACACTCTGATAGCT
Sciurus carolinensis genome assembly, chromosome: 2.
LR738591.1:98114127-98114144
CCCATCATGGAAGATTAAAATTTAGTCAGG98114127AGGCTTGGAAATGATGCTAGTAGTAAAACTGATTTATTAAAGAAAAAA
Sciurus vulgaris genome assembly, chromosome: 10.
LR738620.1:19822919-19822936
AAACATGGTTAAGACAAAAGAAAAAGATCA19822919AGGCTTGGAAATGATGCTAACCACTCAGAGTTAGTTTAGAATCTGAAG
Onychomys arenicola genome assembly, chromosome: 4.
OX460350.1:43604137-43604154
GGGTGAATCATCTAATCTCGCCACTGCTAC43604137AGGCTTGGAAATGATGCTTTTAAAGAAAAACGTGAGTCTTCTCTGTTT
Onychomys arenicola genome assembly, chromosome: 4.
OX460445.1:43006385-43006402
GGGTGAATCATCTAATCTCGCCACTGCTAC43006385AGGCTTGGAAATGATGCTTTTAAAGAAAAACGTGAGTCTTCTCTGTTT
Somateria mollissima genome assembly, chromosome: 3.
OX598304.1:48721266-48721283
ACACACAATGCAACATGCCCAAAAGGCACG48721266AGGCTTGGAAATGATGCTGAGGATCTTTTCCAGAAGTGAAATGTTCTC
Somateria mollissima genome assembly, chromosome: 3.
OX598692.1:48766669-48766686
ACACACAATGCAACATGCCCAAAAGGCACG48766669AGGCTTGGAAATGATGCTGAGGATCTTTTCCAGAAGTGAAATGTTCTC
Mobula hypostoma genome assembly, chromosome: 11.
OY992602.1:101206449-101206466
TATAAACCATTTGAGCGCCCCGTGGAGGGG101206449AGGCTTGGAAATGATGCTTTTTTGGCCTTAAGCTGCGAATTTCTGCTG
s13dLA03C01RT002_521997 Lupinus albus L. (white lupin) root Lupinus albus cDNA, mRNA sequence.
FG089701.1:332-349
TACCCAGTGAGTCATGGAACACATGCTGTG332AGGCTTGGAAATGATGCTTCAATCTCCCAAACCATCAAGGTCAAACCT
s13dLA58B12RT047_528569 Lupinus albus L. (white lupin) root Lupinus albus cDNA, mRNA sequence.
FG092899.1:337-354
TACCCAGTGAGTCATGGAACACATGCTGTG337AGGCTTGGAAATGATGCTTCAATCTCCCAAACCATCAAGGTCAAACCT
Trifolium repens mRNA, clone: WCC26d14_026, unspecified EST.
FY463178.1:302-319
TTCCCAGTGTCTCATGGAATACATGCTATC302AGGCTTGGAAATGATGCTACAATTTCTCAAACAATTAAGGTCAAACCT
Rattus norvegicus clone CH230-486H11, WORKING DRAFT SEQUENCE, 2 ordered pieces.
AC119371.6:149703-149720
CTTCTTTAAACAACTGCTTCCATGAGATTA149703AGGCTTGGAAATGATGCTGCTGTGTTTTGAGGACACACTCTGATAGCT
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-39J4.
CU929643.2:101673-101690
TGCTTTTCTCACCTTCCCAGGTGAGGAGTC101673AGGCTTGGAAATGATGCTCAATTCCTGCAGTAATGCAGCTAATAGAGC
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:3728366-3728383
TTCCCAGTGTCTCATGGAATACATGCTATC3728366AGGCTTGGAAATGATGCTACAATTTCTCAAACAATTAAGGTCAAACCC
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:3573667-3573684
TTCCCAGTGTCTCATGGAATACATGCTATC3573667AGGCTTGGAAATGATGCTTCAATTTCTCAAACAATTAAGGTCAAACCT
Porpolomopsis calyptriformis genome assembly, chromosome: 8.
OX621170.1:1125360-1125377
TGAATCGATCATCGCATCTAAGCCTGAGTT1125360AGGCTTGGAAATGATGCTCGATAAACGAGCTGTTAGGAGATGATTTCT
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:3679367-3679384
TTCCCAGTGTCTCATGGAATACATGCTATT3679367AGGCTTGGAAATGATGCTACAATTTCTCAAACAATTAAGGTCAAACCT
Portevinia maculata genome assembly, chromosome: X.
OX454529.1:2849357-2849374
TGTTTTTCCACATTCGGCTGATGGCCGGGA2849357AGGCTTGGAAATGATGCTGCATCCGATTGCCCAGGAACATTTTACTGC
Sepioteuthis lessoniana genome assembly, chromosome: 23.
OY757926.1:35918409-35918426
TGTAATTGGCGCACTTGTAACAGTCCCCAA35918409AGGCTTGGAAATGATGCTGAAAGATTTCGAAATCGGAAGACGAACCGA
Sepia lycidas genome assembly, chromosome: 41.
OZ010611.1:35850323-35850340
TAACAACAAAGACAACTTTAATTTATAAAA35850323AGGCTTGGAAATGATGCTTAAATATAGATATAACCTGCTAAACCTAAG
Sciurus carolinensis genome assembly, chromosome: 9.
LR738598.1:122351089-122351106
CTTCAGATTTTAAACTAACTCTGAGTGCTT122351089AGCATCATTTCCAAGCCTTGATCTTTTCTTTTGTCTTAACCATGTTTT
Muscardinus avellanarius genome assembly, chromosome: 2.
OY726558.1:155503523-155503540
CACTTGACTATTAATATTTTGGCCACTGGT155503523AGCATCATTTCCAAGCCTTTTTCTCAATCTCTTCTCTCTCCAAGTGAT
Micromys minutus genome assembly, chromosome: 2.
OZ004782.1:97397622-97397639
TGACTCATGAGCCCAACACTGAAAATAGAG97397622AGCATCATTTCCAAGCCTAGGAAGACCTTGCACTTCCTCAAATCACCT
Felis catus Senzu DNA, chromosome: E2, American Shorthair breed.
AP023166.1:59061390-59061407
TGCTACTGTATAGGTTCGTGTGGCTCAAAG59061390AGCATCATTTCCAAGCCTCGCCGTGCCCCACACCGACTTGCACCCGTG
Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:100623048-100623065
GCTCTATTAGCTGCATTACTGCAGGAATTG100623048AGCATCATTTCCAAGCCTGACTCCTCACCTGGGAAGGTGAGAAAAGCA
Sylvilagus floridanus genome assembly, chromosome: 12.
OX463234.1:42427633-42427650
TAACCTGACGTCTGGAATACTTAATGTGTC42427633AGCATCATTTCCAAGCCTGTCAAGTGTTATCTCATTTCACCTATGCGT
Sus scrofa genome assembly, chromosome: 6.
OY997213.1:102768478-102768495
GCTCTATTAGCTGCATTACTGCAGGAATTG102768478AGCATCATTTCCAAGCCTGACTCCTCACCTGGGAAGGTGAGAAAAGCA
Salmo trutta genome assembly, chromosome: 31.
LR584423.1:39979364-39979381
ACGTGGCTCAACGTTGTAGCGTGGATTAAC39979364AGCATCATTTCCAAGCCTTTTTTTTTTTTTTCTAACTGTTTCTTCTTC
Argentina silus genome assembly, chromosome: 12.
OX637379.1:3087727-3087744
TGGCGTAAGCCGAGAGTCATTTTGTAACCA3087727AGCATCATTTCCAAGCCTCAGTGCTGTGTCACCAGTTACAGTGGTGCC
Nesoenas mayeri genome assembly, chromosome: 4.
OY720059.1:25647496-25647513
ACATCCACACCACTAGAACAGTCCAACATC25647496AGCATCATTTCCAAGCCTTGCAATAGAAATTTCATTTATTAACCTCAC
Avena atlantica genome assembly, chromosome: 5A.
OU342737.1:187011801-187011818
ACTTTATCCTGTCAATTCTTTTTTATCAAA187011801AGCATCATTTCCAAGCCTCCCAGAGTATTTAATGTTCTTTAATGGTAC
Trifolium subterraneum genome assembly, chromosome: 6.
OX637466.1:52053673-52053690
AGGTTTGACCTTAATTGTTTGAGAAATTGA52053673AGCATCATTTCCAAGCCTGATAGCATGTATTCCATGAGACACTGGGAA
Euphorbia lathyris genome assembly, chromosome: 6.
OY755225.1:27232512-27232529
TATGGACTAAGCAACCTATGTAAGAACAAA27232512AGCATCATTTCCAAGCCTAATTGCGTCAGTCTGTGACACCAATATCAA
Erannis defoliaria genome assembly, chromosome: 1.
FR990066.1:9296463-9296480
GCTCGAAGCGAGTTGGAACTCTCTACTTGC9296463AGCATCATTTCCAAGCCTATGCCATTTGGGAATATTCAAACGAAAAGA
Parasteatoda lunata genome assembly, chromosome: X1.
OX421980.1:835990-836007
AAATATAGAAGTAAAATTAGTTAATTATAG835990AGCATCATTTCCAAGCCTTCAAATAACATATACAACGTGTCGCACCTA
Hypomecis punctinalis genome assembly, chromosome: 18.
OX438812.1:20922622-20922639
AGTGTGCGCAGGAAACGTAAACGTTTACTA20922622AGCATCATTTCCAAGCCTAGGCATAGATAACAGCGCAGGCTGCGCAGG
Hypomecis punctinalis genome assembly, chromosome: 18.
OX438812.1:20926123-20926140
AGTGTGCGCAGGAAACGTAAACGTTTACTA20926123AGCATCATTTCCAAGCCTAGGCATAGATAACAGCGCAGGCTGCGCAGG
Hypomecis punctinalis genome assembly, chromosome: 18.
OX438812.1:20929624-20929641
AGTGTGCGCAGGAAACGTAAACGTTTACTA20929624AGCATCATTTCCAAGCCTAGGCATAGATAACAGCGCAGGCTGCGCAGG
Tipula vernalis genome assembly, chromosome: 3.
OY282560.1:262775694-262775711
AACACTGCGTATTTTTTGAGTTATTGCTCT262775694AGCATCATTTCCAAGCCTAAACTCACACAACAAATAACTAACAATTTT
Axinella damicornis genome assembly, chromosome: 11.
OZ007515.1:5445447-5445464
TCATGTTCATGGTCATACTGGGAGCAAGGT5445447AGCATCATTTCCAAGCCTTCCAATACATAGCTAGTACCTTTGAGTTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGCTTGGAAATGATGCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGCTTGGAAATGATGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.462 | 0.453 | search_plus_done; http://172.18.8.135:50400/match?q=AGGCTTGGAAATGATGCT&k=0&no_gap=0&offset=0&limit=50
0.587 | 0.125 | search_minus_done; http://172.18.8.135:50400/match?q=AGCATCATTTCCAAGCCT&k=0&no_gap=0&offset=0&limit=30
0.600 | 0.013 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).