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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 07:54:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

030629ABOC002154HT (ABOC) Crab apple mature fruit Malus sieboldii cDNA clone ABOC002154, mRNA sequence.
CN915615.1:174-193
ATGGAGTTGAGAAATTTCTCAGAAATAAAG174AGGCTTTGGCTGCATGTGACATAGCTGTGTTTGTTCACGACAGTTCTGAT
Mdrta1015I04.g1 Apple_EST_Mdrta Malus domestica cDNA similar to ref|NP_198106.1| GTP-binding protein - related [Arabidopsis thaliana] gb|AAL91169.1| unknown protein [Arabidopsis thaliana] gb|AAO29970.
DT002054.1:445-464
ATGGAGTTGAGAAATTTCTCAGAAATAAAG445AGGCTTTGGCTGCATGTGACATAGCTGTGTTTGTTCACGACAGTTCTGAT
Pyrus pyrifolia mRNA, clone: NFW2_03_52, 3' end sequence, expressed in flower.
HX743557.1:49-68
ATGGAGTTGAGAAATTTCTCAGAAATAAAG49AGGCTTTGGCTGCATGTGACATAGCTGTGTTTGTTCACGACAGTTCTGAT
TSA: Pyrus communis mRNA, contig: lc6529.
FX615114.1:84-103
ATGGAGTTGAGAAATTTCTCAGAAATAAAG84AGGCTTTGGCTGCATGTGACATAGCTGTGTTTGTTCACGACAGTTCTGAT
TSA: Pyrus x bretschneideri Unigene302_XinShao mRNA sequence.
JR595727.1:363-382
ATGGAGTTGAGAAATTTCTCAGAAATAAAG363AGGCTTTGGCTGCATGTGACATAGCAGTGTTTGTTCACGACAGTTCTGAT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:3419346-3419365
ATGGAGTTGAGAAATTTCTCAGAAATAAAG3419346AGGCTTTGGCTGCATGTGACATAGCTGTGTTTGTTCACGACAGGTAAGCA
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:3425606-3425625
ATGGAGTTGAGAAATTTCTCAGAAATAAAG3425606AGGCTTTGGCTGCATGTGACATAGCTGTGTTTGTTCACGACAGGTAAGCA
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:3309207-3309226
ATGGAGTTGAGAAATTTCTCAGAAATAAAG3309207AGGCTTTGGCTGCATGTGACATAGCTGTGTTTGTTCACGACAGGTAAGCA
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:3356275-3356294
ATGGAGTTGAGAAATTTCTCAGAAATAAAG3356275AGGCTTTGGCTGCATGTGACATAGCTGTGTTTGTTCACGACAGGTAAGCA
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:2574085-2574104
ATGGAGTTGAGAAATTTCTCAGAAATAAAG2574085AGGCTTTGGCTGCATGTGACATAGCTGTGTTTGTTCACGACAGGTAAGCA
Mdlr7002K15_e24057.b1 Apple_EST_Mdlr Malus domestica cDNA 3' similar to ref|NP_198106.1| GTP-binding protein - related [Arabidopsis thaliana] gb|AAL91169.1| unknown protein [Arabidopsis thaliana] gb|A
GO557465.1:630-649
ATCAGAACTGTCGTGAACAAACACAGCTAT630GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:28331542-28331561
TGCTTACCTGTCGTGAACAAACACAGCTAT28331542GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:29045498-29045517
TGCTTACCTGTCGTGAACAAACACAGCTAT29045498GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:28781264-28781283
TGCTTACCTGTCGTGAACAAACACAGCTAT28781264GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:26667040-26667059
TGCTTACCTGTCGTGAACAAACACAGCTAT26667040GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:28985920-28985939
TGCTTACCTGTCGTGAACAAACACAGCTAT28985920GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Malus domestica genome assembly, chromosome: 12.
OU696688.1:28855903-28855922
TGCTTACCTGTCGTGAACAAACACAGCTAT28855903GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Malus domestica genome assembly, chromosome: 12.
OU744553.1:29585115-29585134
TGCTTACCTGTCGTGAACAAACACAGCTAT29585115GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Malus domestica genome assembly, chromosome: 12.
OU744964.1:28744511-28744530
TGCTTACCTGTCGTGAACAAACACAGCTAT28744511GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Malus domestica genome assembly, chromosome: 12.
OU745002.1:28788840-28788859
TGCTTACCTGTCGTGAACAAACACAGCTAT28788840GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:40268394-40268413
TGCTTACCTGTCGTGAACAAACACAGCTAT40268394GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Pyrus communis genome assembly, chromosome: 17.
OY757084.1:19151226-19151245
TGCTTACCTGTCGTGAACAAACACAGCTAT19151226GTCACATGCAGCCAAAGCCTCTTTATTTCTGAGAAATTTCTCAACTCCAT
Eunapius fragilis genome assembly, chromosome: 3.
OY811973.1:7576838-7576857
CAGGAAATGGATGTTTGGAAATGAATCTTT7576838GTCACATGCAGCCAAAGCCTCAAGAAGCGTTTTAGGAATTTCACTTTTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGCTTTGGCTGCATGTGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGCTTTGGCTGCATGTGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.469 | 0.461 | search_plus_done; http://172.18.8.135:50400/match?q=AGGCTTTGGCTGCATGTGAC&k=0&no_gap=0&offset=0&limit=50
0.666 | 0.197 | search_minus_done; http://172.18.8.135:50400/match?q=GTCACATGCAGCCAAAGCCT&k=0&no_gap=0&offset=0&limit=40
0.675 | 0.009 | cgi_end;

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