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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:52:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CGN-24297 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w32f7 5', mRNA sequence.
DV683712.1:59-86
GATCTTTTGATCAAAATATATTCTCCAGTT59AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTAGGAAGGAAGGAAGGAAGGA
CGN-26296 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w31f7 5', mRNA sequence.
DV685092.1:59-86
GATCTTTTGATCAAAATATATTCTCCAGTT59AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTAGGAAGGAAGGAAGGAAGGA
TransId-83953 CACAT36FR28 Coffea arabica cDNA clone CACAT36FR28_Q3_03_J05_074.F similar to Symbol: None | expressed protein | chr4:8383765-8385074 FORWARD | Aliases: None, mRNA sequence.
GR984927.1:105-132
GATCTTTTGATCAAAATATATTCTCCAGTT105AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTATAAAGGAAGGAAGGAAGCA
TransId-94526 CACAT36MER Coffea arabica cDNA clone CACAT36MER_Q2_01_G16_247.F similar to Symbol: None | expressed protein | chr4:8383765-8385074 FORWARD | Aliases: None, mRNA sequence.
GR988852.1:107-134
GATCTTTTGATCAAAATATATTCTCCAGTT107AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTATAAAGGAAGGAAGGAAGGA
TransId-101833 CACAT45FR Coffea arabica cDNA clone CACAT45FR_M001_D13_196.F similar to Symbol: None | expressed protein | chr4:8383765-8385074 FORWARD | Aliases: None, mRNA sequence.
GR990838.1:107-134
GATCTTTTGATCAAAATATATTCTCCAGTT107AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTATAAAGGAAGGAAGGAAGGA
TransId-218151 CACATN1 Coffea arabica cDNA clone CACATN1-5N86TV similar to Hypothetical protein - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GR998043.1:114-141
GATCTTTTGATCAAAATATATTCTCCAGTT114AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTATAAAGGAAGGAAGGAAGGA
TransId-256798 CAET87R Coffea arabica cDNA clone CAET87R-CAEU777TV similar to Hypothetical protein - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT015136.1:53-80
ATTCTTTTGATCAAAATATATTCTCCAGTT53AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTATAAAGGAAGGAAGGAAGGA
CA00-XX-CL2-001-G06-EZ.F Coffea arabica CL2 Coffea arabica cDNA clone CA00-XX-CL2-001-G06-EZ, mRNA sequence.
GT682464.1:72-99
GATCTTTTGATCAAAATATATTCTCCAGTT72AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTATAAAGGAAGGAAGGAAGGA
Coffea arabica clone BAC 136-1N, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.
GU123899.1:59030-59057
GATCTTTTGATCAAAATATATTCTCCAGTT59030AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTATAAAGGAAGGAAGGAAGCA
Coffea canephora isolate HD-200-94 clone BAC CC-62-4K, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
HQ696507.1:136122-136149
GATCTTTTGATCAAAATATATTCTCCAGTT136122AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTATAAAGGAAGGAAGGAAGGA
Coffea arabica cultivar iapar59 clone BAC 121-12L, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces.
HQ696510.1:59394-59421
GATCTTTTGATCAAAATATATTCTCCAGTT59394AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTATAAAGGAAGGAAGGAAGGA
CCES21 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110674.1:59-86
GATCTTTTGATCAAAATATATTCTCCAGTT59AGGGAAAAAGAAGAGTGAGAAGAATATTTATTGATTGTAGGAAGGAAGGAAGGAAGGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGGAAAAAGAAGAGTGAGAAGAATATT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGGAAAAAGAAGAGTGAGAAGAATATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.740 | 0.731 | search_plus_done; http://172.18.8.135:50400/match?q=AGGGAAAAAGAAGAGTGAGAAGAATATT&k=0&no_gap=0&offset=0&limit=50
0.849 | 0.110 | search_minus_done; http://172.18.8.135:50400/match?q=AATATTCTTCTCACTCTTCTTTTTCCCT&k=0&no_gap=0&offset=0&limit=38
0.849 | 0.000 | cgi_end;

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