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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 16:07:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Erithacus rubecula genome assembly, chromosome: 2.
LR812104.1:86852676-86852695
TAAACTTACTCAAGTTGGCTACAAACACGG86852676AGGGGAATTTTGTCTCAAACAAGGCTTTCATTGAGAAGAGACTAGGGCTC
Rhododendron vialii isolate Sample 1 chromosome 13b.
CP127064.1:12095990-12096009
AGCATTGCATCCAGAGCAGTGTTGGTCAGA12095990AGGGGAATTTTGTCTCAAACCTAGGAACAATGTCCATTATGCAATTCAAA
Rhododendron vialii isolate Sample 1 chromosome 13a.
CP127077.1:11831849-11831868
AGCATTGCATCCAGAGCAGTGTTGGTCAGA11831849AGGGGAATTTTGTCTCAAACCTAGGAACAATGTCCATTATGCAATTCAAA
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5367522-5367541
ACTTCACTCTGAATCTCGAATATCAAGTAT5367522AGGGGAATTTTGTCTCAAACAAAATTAGACAGACACCTATTGTATATTTG
Psittacula echo genome assembly, chromosome: 1.
OY725420.1:1145349-1145368
CCTTCAAGTATCAAGACTTCCAGAGCTCTT1145349GTTTGAGACAAAATTCCCCTCACCAGTTTCACCCTCTTTCACAAAGAAGT
Steromphala cineraria genome assembly, chromosome: 11.
OU744730.1:33163596-33163615
TTAATGTCGACGTCTAATCTACTACAGGCC33163596GTTTGAGACAAAATTCCCCTCAAAGAATTATTAACTCAAAAACAAATAAT
Gastrophysa polygoni genome assembly, chromosome: 1.
OY755082.1:30111590-30111609
ATTATGGTAATTCATTCAGTTCACGTATTC30111590GTTTGAGACAAAATTCCCCTATTCTATTCGTTTCTCCTTGTCTACAGATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGGGAATTTTGTCTCAAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGGGAATTTTGTCTCAAAC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.316 | 0.307 | search_plus_done; http://172.18.8.135:50400/match?q=AGGGGAATTTTGTCTCAAAC&k=0&no_gap=0&offset=0&limit=50
0.433 | 0.117 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTGAGACAAAATTCCCCT&k=0&no_gap=0&offset=0&limit=46
0.435 | 0.002 | cgi_end;

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