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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 21:01:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Raphanus sativus mRNA, clone: RSCS02N11, 5' end sequence.
FY446833.1:294-313
TGCGACTTTGGAAGCGTTTCGGAAGCTGCT294AGGGTGGTTAATGGGAGGAGGAGGGTTCACGAGGAGGAAGAATTGAGAGA
Raphanus sativus mRNA, clone: RSCS11C10, 5' end sequence.
FY449711.1:656-675
TGCGACTTTGGAAGCGTTTCGGAAGCTGCT656AGGGTGGTTAATGGGAGGAGGAGGGTTCACGAGGAGGAAGAATTGAGAGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_20609.
FX794047.1:136-155
TGCGACTTTGGAAGCGTTTCGGAAGCTGCT136AGGGTGGTTAATGGGAGGAGGAGGGTTCACGAGGAGGAAGAATTGAGAGA
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:4684610-4684629
TGCGACTTTGGAAGCGTTTCGGAAGCTGCT4684610AGGGTGGTTAATGGGAGGAGGGTTCACGAGGAGGAAGAAGTGAGAGAGAA
Piscicola geometra genome assembly, chromosome: 14.
OX030968.1:1938889-1938908
GTTAGTGGGGGAAGGGTGGTTAGTGGGGGA1938889AGGGTGGTTAATGGGAGGAGGATGGTTAGTGGGGGAAGGATGGTTAGTGG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_13119.
FX668761.1:593-612
TCTCTCAATTCTTCCTCCTCGTGAACCCTC593CTCCTCCCATTAACCACCCTAGCAGCTTCCGAAACGCTTCCAAAGTCGCA
TSA: Raphanus sativus RS16732 mRNA sequence.
JT801279.1:937-956
TCTCTCAATTCTTCCTCCTCGTGAACCCTC937CTCCTCCCATTAACCACCCTAGCAGCTTCCGAAACGCTTCCAAAGTCGCA
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:28294772-28294791
TTCTCTCTCACTTCTTCCTCCTCGTGAACC28294772CTCCTCCCATTAACCACCCTAGCAGCTTCCGAAACGCTTCCAAAGTCGCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGGTGGTTAATGGGAGGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGGTGGTTAATGGGAGGAG | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.472 | 0.464 | search_plus_done; http://172.18.8.135:50400/match?q=AGGGTGGTTAATGGGAGGAG&k=0&no_gap=0&offset=0&limit=50
0.602 | 0.130 | search_minus_done; http://172.18.8.135:50400/match?q=CTCCTCCCATTAACCACCCT&k=0&no_gap=0&offset=0&limit=45
0.604 | 0.002 | cgi_end;

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