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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 19:46:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

PP_LEa0003O23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0003O23f, mRNA sequence.
BU039806.1:154-173
TCCGACCCGTTAGGGTTCCAGTTAGTGTTC154AGGGTTGGGATTAGGGTTCTAGTAATTAGCAATAAGGAAGATGTATGCTG
PA__Ea0001P08f Almond developing seed Prunus dulcis cDNA clone PA__Ea0001P08f, mRNA sequence.
BU572795.1:145-164
TCCGACCCGTTAGGGTTCTAGTTAGTGTTC145AGGGTTGGGATTAGGGTTCTAGTAATTAGCAATAAGGAAGATGTATGCTG
BR087358 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-039H06 5', mRNA sequence.
EX101068.1:11-30
GTCCCACGCT11AGGGTTGGGATTAGGGTTCTGCTGCTGAGGGGGAACAATTGGTCGGGTCT
Prunus avium EST, clone WZ0APVCA12YK23FM1.
HE640696.1:240-259
TCCGACCCGTTAGGCTTCAAGTTAGTGTTC240AGGGTTGGGATTAGGGTTCTAGTAATTAGCAATAAGGAAGATGTATGCTG
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:5049054-5049073
CTGGAGATTCGGTGTAGGCTGTCCCAAGCT5049054AGGGTTGGGATTAGGGTTCTGCTGCTGAGGGGGAACAATTGGTCGGGTCT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:8410343-8410362
CTGGAGATTCGGTGTAGGCTGTCCCAAGCT8410343AGGGTTGGGATTAGGGTTCTGCTGAGGCGGAACAATTGGCCGAGTCTGGA
Chionographis japonica genome assembly, chromosome: 11.
OX393559.1:17641268-17641287
GGAAAATTGTGCCGTCGTTTTTGGTCTGTG17641268AGGGTTGGGATTAGGGTTCTTTGACAAACCCTAGAAAAAAAGACGTGGGA
Harmothoe impar genome assembly, chromosome: 8.
OX381711.1:5437268-5437287
ATGTTTGACCACAAATTACAATAAAGGGTT5437268AGGGTTGGGATTAGGGTTCTTAAAACGGGAGGCTAGTGTCTCTCGAGACC
Salmo trutta genome assembly, chromosome: 7.
LR584430.1:13743593-13743612
ACAGACAGACAGACAGACAGACAGACAGAC13743593AGAACCCTAATCCCAACCCTAAACCTAATCACTAACCCTAAACCTAAACC
Sequence 34 from Patent WO2012088289.
JA817697.1:338-357
AGACCCGACCAATTGTTCCCCCTCAGCAGC338AGAACCCTAATCCCAACCCTAGCTTGGGACAGCCTACACCGAATCTTCAG
Sequence 34 from patent US 9702013.
KH919224.1:338-357
AGACCCGACCAATTGTTCCCCCTCAGCAGC338AGAACCCTAATCCCAACCCTAGCTTGGGACAGCCTACACCGAATCTTCAG
Sequence 34 from patent US 10590490.
MO959501.1:338-357
AGACCCGACCAATTGTTCCCCCTCAGCAGC338AGAACCCTAATCCCAACCCTAGCTTGGGACAGCCTACACCGAATCTTCAG
BN18DYSC_UP_145_E09_3APR2008_071 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG565235.1:197-216
AGACCCGACCAATTGTTCCCCCTCAGCAGC197AGAACCCTAATCCCAACCCTAGCTTGGGACAGCCTACACCGAATCTCCAG
MLN2_2400 Brassica rapa mature lateral nectary, normalized (MLN2) Brassica rapa cDNA similar to electron carrier/ heme binding / iron ion binding, mRNA sequence.
GR722378.1:211-230
AGACCCGACCAATTGTTCCCCCTCAGCAGC211AGAACCCTAATCCCAACCCTAGCTTGGGACAACCTACACCGAATCTCCAG
298j_A11_001 ovule cDNA library of a seedless grape (Vitis vinifera var.Thomson seedless) Vitis vinifera cDNA, mRNA sequence.
GR905270.1:579-598
CTCATCTGCTGGCCTTACTGAGAGCCACCC579AGAACCCTAATCCCAACCCTAGTCCAATATCGAATTCTGTAACTGTGAAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2291.
FX700381.1:315-334
AGACCCGACCAATTGTTCCCCCTCAGCAGC315AGAACCCTAATCCCAACCCTAGCGTGGGACAGCCTACACCGAATCTCCAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10813.
FX734806.1:326-345
AGACCCGACCAATTGTTCCCCCTCAGCAGC326AGAACCCTAATCCCAACCCTAGCGTGGGACAGCCTACACCGAATCTCCAG
BONBU82TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONBU82, genomic survey sequence.
BZ440697.1:630-649
TCCAGACTCGGCCAATTGTTCCGCCTCAGC630AGAACCCTAATCCCAACCCTAGCTTGGGACAGCCTACACCGAATCTCCAG
BOT01-45F10TR BOT01 Brassica oleracea genomic clone BOT01-45F10, genomic survey sequence.
FI704218.1:423-442
TCCAGACTCGGCCAATTGTTCCGCCTCAGC423AGAACCCTAATCCCAACCCTAGCTTGGGACAGCCTACACCGAATCTCCAG
Prunus dulcis DNA, pseudomolecule Pd08.
AP019304.1:15722092-15722111
CAGCATACATCTTCCTTATTGCTAATTACT15722092AGAACCCTAATCCCAACCCTGAACACTAACTAGAACCCTAACGGTCGGAA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:15711794-15711813
AGACCCGACCAATTGTTCCCCCTCAGCAGC15711794AGAACCCTAATCCCAACCCTAGCGTGGGACAGCCTACACCGAATCTCCAG
Brassica napus genome assembly, chromosome: C09.
HG994373.1:57016358-57016377
TCCAGACTCGGCCAATTGTTCCGCCTCAGC57016358AGAACCCTAATCCCAACCCTAGCTTGGGACAGCCTACACCGAATCTCCAG
Brassica rapa genome, scaffold: A10.
LR031577.1:12628572-12628591
AGACCCGACCAATTGTTCCCCCTCAGCAGC12628572AGAACCCTAATCCCAACCCTAGCGTGGGACAGCCTACACCGAATCTCCAG
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:55165240-55165259
TCCAGACTCGGCCAATTGTTCCGCCTCAGC55165240AGAACCCTAATCCCAACCCTAGCTTGGGACAGCCTACACCGAATCTCCAG
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:15384927-15384946
AGACCCGACCAATTGTTCCCCCTCAGCAGC15384927AGAACCCTAATCCCAACCCTAGCGTGGGACAGCCTACACCGAATCTCCAG
Chionographis japonica genome assembly, chromosome: 5.
OX393553.1:54897000-54897019
TCCCATGTCTTCTACTCCAGGGTTTGCAAC54897000AGAACCCTAATCCCAACCCTGACAGACCAAAGACGGCGACTCGCAACGAC
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737419.1:439010644-439010663
CTAAATCCCCAAACCCAAATCCAGCAGGCT439010644AGAACCCTAATCCCAACCCTAAATCCCCAAACCCAAAACCCAAATCCAGC
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737419.1:439010699-439010718
CCCAAACCCAAAACCCAAATCCAGCAGGCT439010699AGAACCCTAATCCCAACCCTAAATTCCCAAATGCAGCAGGCTAGAACCCC
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737463.1:414798582-414798601
CTAAATTCCCAAACCCAAATCCAGCAGGCT414798582AGAACCCTAATCCCAACCCTAAATCCCCAAATGCAGCAGGCTAGAACCCT
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737477.1:403421773-403421792
CTAAATTCCCAAACCCAAATCCAGCAGGCT403421773AGAACCCTAATCCCAACCCTAAATCCCCAAATGCAGCAGGCTAGAACCCT
Hordeum bulbosum genome assembly, chromosome: 4H_4.
OY737484.1:432765500-432765519
CTAAATTCCCAAACCCAAATCCAGCAGGCT432765500AGAACCCTAATCCCAACCCTAAATCCCCAAATGCAGCAGGCTAGAACCCT
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737499.1:343682705-343682724
CTAAATCCCCAAACCCAAATCCAGCAGGCT343682705AGAACCCTAATCCCAACCCTAAATCCCCAAACCCAAAACCCAAATCCAGC
Hordeum bulbosum genome assembly, chromosome: 4H_2.
OY737499.1:343682760-343682779
CCCAAACCCAAAACCCAAATCCAGCAGGCT343682760AGAACCCTAATCCCAACCCTAAATCCCCAAATGCAGCAGGCTAGAACCCC
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737506.1:378834329-378834348
CTAAATTCCCAAACCCAAATCCAGTAGGCT378834329AGAACCCTAATCCCAACCCTAAATCCCCAAATGCAGCAGGCTAGAACCCT
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737643.1:388238376-388238395
CTAAATCCCCAAACCCAAATCCAGCAGGCT388238376AGAACCCTAATCCCAACCCTAAATCCCCAAACCCAAAACCCAAATCCAGC
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737643.1:388238431-388238450
CCCAAACCCAAAACCCAAATCCAGCAGGCT388238431AGAACCCTAATCCCAACCCTAAATCCCCAAATGCAGCAGGCTAGAACCCC
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737657.1:444259711-444259730
CTAAATCCCCAAACCCAAATCCAGCAGGCT444259711AGAACCCTAATCCCAACCCTAAATCCCCAAACCCAAAACCCAAATCCAGC
Hordeum bulbosum genome assembly, chromosome: 4H_3.
OY737657.1:444259766-444259785
CCCAAACCCAAAACCCAAATCCAGCAGGCT444259766AGAACCCTAATCCCAACCCTAAATCCCCAAATGCAGCAGGCTAGAACCCC
Hordeum bulbosum genome assembly, chromosome: 4H_1.
OY737869.1:424935323-424935342
CTAAATTCCCAAACCCAAATCCAGCAGGCT424935323AGAACCCTAATCCCAACCCTAAATCCCCAAATGCAGCAGGCTAGAACCCT
Alisma plantago-aquatica genome assembly, chromosome: 4.
OY856412.1:761496135-761496154
TCGTCCTCCTCCCTATTTTCTCCTACTCCG761496135AGAACCCTAATCCCAACCCTGCCACACCTTCTGCTTACGACGAGCTCCGC
Luidia sarsii genome assembly, chromosome: 19.
OX465119.1:8199217-8199236
ATCCTAACCCTAATCCTAATCCTAACCCTA8199217AGAACCCTAATCCCAACCCTTATCCTAATCCTTACTCTATCCCTAACGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGGTTGGGATTAGGGTTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGGTTGGGATTAGGGTTCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.531 | 0.523 | search_plus_done; http://172.18.8.135:50400/match?q=AGGGTTGGGATTAGGGTTCT&k=0&no_gap=0&offset=0&limit=50
1.233 | 0.702 | search_minus_done; http://172.18.8.135:50400/match?q=AGAACCCTAATCCCAACCCT&k=0&no_gap=0&offset=0&limit=42
1.254 | 0.021 | cgi_end;

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