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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 18:55:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Arvicola amphibius genome assembly, chromosome: 18.
LR862398.1:15188219-15188238
AAGCTGTTCTTGTCATTTATATTTTGCCTC15188219AGGGTTTTTCCCCTTTCCTTTCTGTATGTCCTTCTCCATATAGCTGTCTG
Microcaecilia unicolor genome assembly, chromosome: 14.
LR594645.1:14161772-14161791
AAAGGGGTTAGACACATACACTAGGAAAGA14161772AGGGTTTTTCCCCTTTCCTTTTATTAAGTTAGGAAAGTAGGAGGGCTCTC
Microcaecilia unicolor genome assembly, chromosome: 14.
LR594645.1:14623473-14623492
AAAGGGGTTAGACACATACACTAGGAAAGA14623473AGGGTTTTTCCCCTTTCCTTTTATTAAGTTAGGAAAGTAGGAGGGCTCTC
Anas platyrhynchos genome assembly, chromosome: 3.
LS423613.1:8985822-8985841
GGAAACACATCGGGCTTCAGAATTTTGGCA8985822AGGGTTTTTCCCCTTTCCTTTTCATAAAGGAAGACTACTCAGCTAATGAC
Caprimulgus europaeus genome assembly, chromosome: 4.
OU015526.1:30193086-30193105
TGGGTCATGTATTTCATAGCTGTCTGCAAT30193086AGGGTTTTTCCCCTTTCCTTTGAAATCCCTAGATACAGTCATTGGGAGAG
Zeus faber genome assembly, chromosome: 18.
OY482862.1:8470533-8470552
AATCCTTCATTTAACACCGGTTAATGGTTA8470533AGGGTTTTTCCCCTTTCCTTTGATTAACATCCTACCAAAGACGTGTACAT
Pseudorca crassidens DNA, clone: QGB1-086I16, Reverse sequence of BAC-end, genomic survey sequence.
DE706649.1:1-20
1AGGGTTTTTCCCCTTTCCTTCCATAGTCTTTAGTGTGATTGCTTTTAGTT
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:16253772-16253791
TATTGGCAACAATGTCAGGGAGGTAAAATT16253772AGGGTTTTTCCCCTTTCCTTCTATATGATGAGAAAAATGAAATATTTGCG
Camelina sativa cultivar CO46 chromosome 18.
CP131548.1:12906349-12906368
AGTCGTCTAATAAGACAAAAGAACGACTTA12906349AGGGTTTTTCCCCTTTCCTTTTGCCCAAAACGCAGCGTTTAACTTAAGTT
Avena insularis genome assembly, chromosome: 3D.
OU342347.1:315625285-315625304
TTGCCCCCCAAGTTTCCCCTTTCCTTCTTT315625285AGGGTTTTTCCCCTTTCCTTTGGGGTTGGCTGGTTGGGCCCCTTGGGTCT
Avena sativa genome assembly, chromosome: 3A.
OU342380.1:282674862-282674881
GCCCCCCAAGTTTCTTCCCCTTTCCTTATT282674862AGGGTTTTTCCCCTTTCCTTGTGTTGCCAGTTGGGCCCTTTGGGTCATGG
Avena sativa genome assembly, chromosome: 3A.
OU342380.1:357552471-357552490
TTGCCCCCCAAGTTTTCCCTTTCCTTCTTT357552471AGGGTTTTTCCCCTTTCCTTTGGGGTTGACTGGTTGGGCCCCTTGGGTCT
Avena sativa genome assembly, chromosome: 5A.
OU342382.1:207319516-207319535
CTTGCCCCCCAAGTTTCCCTCTTTCCTTTT207319516AGGGTTTTTCCCCTTTCCTTGTGCTGGCTGGTTGGGATCTTTGGGTCATA
Avena sativa genome assembly, chromosome: 3D.
OU342394.1:307597755-307597774
TTGCCCCCCAAGTTTCCCCTTTCCTTCTTT307597755AGGGTTTTTCCCCTTTCCTTTGGGGTTGGCTGGTTGGGCCCCTTGGGTCT
Avena sativa genome assembly, chromosome: 7D.
OU342398.1:19753564-19753583
GCCCCCCCAAGTTTCCCTTCTTTCCTTATT19753564AGGGTTTTTCCCCTTTCCTTATTAGGGTTTTTCCCTTTTCCTTTGGGTCA
Avena atlantica genome assembly, chromosome: 1A.
OU342733.1:74164009-74164028
TCCCCCCAAGTTTCCCCTCCTTCCTTATTT74164009AGGGTTTTTCCCCTTTCCTTGTGTTGGCCAGTTCGACCCTTTGGGTCATG
Avena atlantica genome assembly, chromosome: 3A.
OU342735.1:396126184-396126203
TTGCCCACCAAGTTTCCCCTTTCCTTCTTT396126184AGGGTTTTTCCCCTTTCCTTTGGGGTTGGCTGGTTGGGCCCCTTGGGTCT
Avena atlantica genome assembly, chromosome: 5A.
OU342737.1:266778732-266778751
ACTTCCCCCCAAGTTTCCCTCTTTCCTTTT266778732AGGGTTTTTCCCCTTTCCTTGTGCTGGTCGGTTGGGATCTTTGGGTCATA
Avena atlantica genome assembly, chromosome: 5A.
OU342737.1:266784929-266784948
ACTTCCCCCCAAGTTTCCCTCTTTCCTTTT266784929AGGGTTTTTCCCCTTTCCTTGTGCTGGTCGGTTGGGATCTTTGGGTCATA
Avena atlantica genome assembly, chromosome: 5A.
OU342737.1:401674339-401674358
CTTGACCCCAAGGTTTCCCTCTTTCCTTTT401674339AGGGTTTTTCCCCTTTCCTTTGGGGTTGGCTGGTTGGGCCCCTTGGGTCT
Avena longiglumis genome assembly, chromosome: 3A.
OU342749.1:408971449-408971468
TTGCCCCCCAAGTTTCCCCTTTCCTTCTTT408971449AGGGTTTTTCCCCTTTCCTTTGGGGTTGACTGGTTGGGCCCCTTGGGTCT
Avena longiglumis genome assembly, chromosome: 7A.
OU342753.1:191673273-191673292
TTACCCCCCAAATTTCCCTCTTTCCATATT191673273AGGGTTTTTCCCCTTTCCTTGTGCAGGACGGTTGGGCCCTTTGGGTCATG
Avena sativa genome assembly, chromosome: 3.
OV702281.1:294106917-294106936
GCCCCCCAAGTTTCTTCCCCTTTCCTTATT294106917AGGGTTTTTCCCCTTTCCTTGTGTTGCCAGTTGGGCCCTTTGGGTCATGG
Avena sativa genome assembly, chromosome: 3.
OV702281.1:373431633-373431652
TTGCCCCCCAAGTTTCCCCTTTCCTTCTTT373431633AGGGTTTTTCCCCTTTCCTTTGGGGTTGACTGGTTGGGCCCCTTGGGTCT
Avena sativa genome assembly, chromosome: 5.
OV702283.1:204506948-204506967
CTTGCCCCCCAAGTTTCCCTCTTTCCTTTT204506948AGGGTTTTTCCCCTTTCCTTGTGCTGGCTGGTTGGGATCTTTGGGTCATA
Avena sativa genome assembly, chromosome: 17.
OV702295.1:325227531-325227550
TTGCCCCCCAAGTTTCCCCTTTCCTTCTTT325227531AGGGTTTTTCCCCTTTCCTTTGGGGTTGGCTGGTTGGGCCCCTTGGGTCT
Avena sativa genome assembly, chromosome: 21.
OV702299.1:19684192-19684211
GCCCCCCCAAGTTTCCCTTCTTTCCTTATT19684192AGGGTTTTTCCCCTTTCCTTATTAGGGTTTTTCCCTTTTCCTTTGGGTCA
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737646.1:46934387-46934406
CTCTCTGTATAAATCTGTCACTCGGGATTT46934387AGGGTTTTTCCCCTTTCCTTTACATAATATATTTAGGTGGTTGAGGGGCT
Pinctada fucata DNA, chromosome 9, nearly complete sequence, Alternate Pseudohaplotype.
AP027124.1:4073556-4073575
TTTCTAAGCAACATATGCTAAAGTTGTAAA4073556AGGGTTTTTCCCCTTTCCTTTTTTAAGCCCTAGGAGTCTTGTATCTGTAC
Bombyx mori p50T DNA, chromosome 03, sequence.
AP028173.1:4514181-4514200
AGGGAAAACCCCGATTTTTTTACTAAAGCC4514181AGGGTTTTTCCCCTTTCCTTGATTAAAAGAATATTTTCTCACACGACACG
Bombyx mori strain P50T chromosome 3.
CP114809.1:4536817-4536836
AGGGAAAACCCCGATTTTTTTACTAAAGCC4536817AGGGTTTTTCCCCTTTCCTTGATTAAAAGAATATTTTCTCACACGACACG
Micromys minutus genome assembly, chromosome: 6.
OZ004786.1:15112742-15112761
CAGTAGTCTGGTCCCTGGATGGTTTTATTA15112742AAGGAAAGGGGAAAAACCCTACTTGGAGAGGTTCATCAGTGAAGAAGCAT
Balaenoptera acutorostrata genome assembly, chromosome: 10.
OX465360.1:54626929-54626948
AGAGTGCAAGAAAGAAGGAAATAAAAAGAG54626929AAGGAAAGGGGAAAAACCCTCACAGAAGTTTTATTTTATACCCAGCCCAT
Pholis gunnellus genome assembly, chromosome: 2.
OU342812.1:7831774-7831793
TAAATGGTTGTTTATTCGGTGGCTGTTTTG7831774AAGGAAAGGGGAAAAACCCTTCATCTGTTGTAAGGATGTATTTGACTCAC
Anas acuta genome assembly, chromosome: 3.
OZ009964.1:10238635-10238654
GTCATTAGCTGAGTAGTCTTCCTTTATGAA10238635AAGGAAAGGGGAAAAACCCTTGCCAAAATTCTGAAGCCCGATGTGTTTCC
Sequence 62013 from patent US 9029636.
HK971076.1:425-444
TCTACCACTTTCATGCATCTCCCCATTCTG425AAGGAAAGGGGAAAAACCCTTTTAGCAGCCTTGATTACAGCCAGAACTTA
GC_Bb032A05.R GC_Bb Glycine cyrtoloba genomic 3', genomic survey sequence.
HN920507.1:905-924
GAGGCTTCTCCAAAATTTTCATGGGAATTT905AAGGAAAGGGGAAAAACCCTTCCTTCCTCCATTCCCAAGGTTTTGGAAAA
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 1.
CP125973.1:262379299-262379318
CCATGACCCAAAGGGCCCAACTGGCAACAC262379299AAGGAAAGGGGAAAAACCCTAATAAGGAGAGGGGAAGAAACTTGGGGGGC
Glycine max cultivar Williams 82 chromosome 11.
CP126436.1:19528587-19528606
TCTACCACTTTCATGCATCTCCCCATTCTG19528587AAGGAAAGGGGAAAAACCCTTTTAGCAGCCTTGATTACAGCCAGAACTTA
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:1616513-1616532
CGAAGGTAGGAAGATGAGACAAAGAAAGGA1616513AAGGAAAGGGGAAAAACCCTTTAACGCACCCTTTAACAAACAAACTTAAT
Avena insularis genome assembly, chromosome: 5D.
OU342349.1:175289585-175289604
TATGACCCAAAGATCCCAACCGGCCAACAC175289585AAGGAAAGGGGAAAAACCCTAAAAGGAAAGAGGGAAACTTGGGGGGCAAG
Avena sativa genome assembly, chromosome: 5D.
OU342396.1:183557709-183557728
TATGACCCAAAGATCCCAACCGGCCAACAC183557709AAGGAAAGGGGAAAAACCCTAAAAGGAAAGAGGGAAACTTGGGGGGCAAG
Avena longiglumis genome assembly, chromosome: 7A.
OU342753.1:298052413-298052432
AGACCCAAAGGTCCCAACCGGCCAACCCCA298052413AAGGAAAGGGGAAAAACCCTAAAGAAGGAAAGGGGAAACTTGGGGGGCAA
Avena sativa genome assembly, chromosome: 19.
OV702297.1:184045149-184045168
TATGACCCAAAGATCCCAACCGGCCAACAC184045149AAGGAAAGGGGAAAAACCCTAAAAGGAAAGAGGGAAACTTGGGGGGCAAG
Buxus sempervirens genome assembly, chromosome: 1.
OX387182.1:31306536-31306555
CTCAAGAAGAGTAAGTTATACTTAATTGAA31306536AAGGAAAGGGGAAAAACCCTACAAAGAATTGAAGGCCGAGTGTTTATTAT
Aphrophora alni genome assembly, chromosome: 11.
OY740776.1:7086572-7086591
ATATATCAATAATGTGCACCTAACACATAA7086572AAGGAAAGGGGAAAAACCCTACCAAAACGGCCTGGCCTGCTTAACTGATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGGTTTTTCCCCTTTCCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGGTTTTTCCCCTTTCCTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.136 | 0.128 | search_plus_done; http://172.18.8.135:50400/match?q=AGGGTTTTTCCCCTTTCCTT&k=0&no_gap=0&offset=0&limit=50
0.273 | 0.136 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGAAAGGGGAAAAACCCT&k=0&no_gap=0&offset=0&limit=19
0.282 | 0.010 | cgi_end;

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