GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:14:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene83740_B1 mRNA sequence.
JV352084.1:91-110
CCCCCATTACATCCACCACCACCCGGCGGC91AGGTACAGTCGTTCCCATGCCTTCCTACTACTCTATTGCGGCCCATTCGA
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:10510680-10510699
CCCCCATTACATCCACCACCACCCGGCGGC10510680AGGTACAGTCGTTCCCATGCCTTCCTACTACTCTATTGCGGCCCATTCGA
Musa acuminata subsp. malaccensis isolate AA chromosome 6.
CP126375.1:8182940-8182959
CCATTACATCCACCACCACCACCCGGCGGC8182940AGGTACAGTCGTTCCCATGCCTTCCTACTACTCTATTGCGGCCCATTCGA
Musa acuminata subsp. malaccensis isolate AA chromosome 17.
CP126386.1:8144496-8144515
CCATTACATCCACCACCACCACCCGGCGGC8144496AGGTACAGTCGTTCCCATGCCTTCCTACTACTCTATTGCGGCCCATTCGA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A06.
HG996471.1:8101437-8101456
CCCCCACTACATCCACCACCACCCGGCGGC8101437AGGTACAGTCGTTCCCATGCCTTCCTACTACTCTATTGCGGCCCATTCGA
TSA: Musa acuminata AAA Group Unigene92776_NK1 mRNA sequence.
JV425639.1:509-528
TCGAATGGGCCGCAATAGAGTAGTAGGAAG509GCATGGGAACGACTGTACCTGCCGCCGGGTGGTGGTGGATGTAATGGGGG
Seq_sg_57-L18.f MAMB Musa acuminata subsp. malaccensis genomic, genomic survey sequence.
HN261679.1:136-155
TCGAATGGGCCGCAATAGAGTAGTAGGAAG136GCATGGGAACGACTGTACCTGCCGCCGGGTGGTGGTGGATGTAGTGGGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGGTACAGTCGTTCCCATGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGTACAGTCGTTCCCATGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.109 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=AGGTACAGTCGTTCCCATGC&k=0&no_gap=0&offset=0&limit=50
0.180 | 0.072 | search_minus_done; http://172.18.8.135:50400/match?q=GCATGGGAACGACTGTACCT&k=0&no_gap=0&offset=0&limit=45
0.182 | 0.001 | cgi_end;

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