GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 01:31:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Camellia sinensis Singletons23863.Casi mRNA sequence.
HP738651.1:826-845
AGAGAGAGAAGCTCTTCATCTTCCCAAAAC826AGGTCCTGTTCCAATACCAACAGATGGAAAAGAGAGAGATTATTATCACT
TSA: Camellia sinensis tea_rep_c13851 mRNA sequence.
KA293134.1:460-479
AGAGAGAGAAGCTCTTCATCTTCCCAAAAC460AGGTCCTGTTCCAATACCAACAGATGGAAAAAGAGAGAGATTATTATCAC
Agelas oroides genome assembly, chromosome: 9.
OX422191.1:2006369-2006388
CTATATCCCAATTCCATTTCCAGACTGCAA2006369AGGTCCTGTTCCAATACCAATTATATGTACATGTTACTGTAAGTTGCTTC
ZYta113 Young leaves cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA 5', mRNA sequence.
GH159043.1:228-247
AGTGATAATAATCTCTCTCTTTTCCATCTG228TTGGTATTGGAACAGGACCTGTTTTGGGAAGATGAAGAGCTTCTCTCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGGTCCTGTTCCAATACCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGTCCTGTTCCAATACCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.135 | 0.126 | search_plus_done; http://172.18.8.135:50400/match?q=AGGTCCTGTTCCAATACCAA&k=0&no_gap=0&offset=0&limit=50
0.261 | 0.126 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGTATTGGAACAGGACCT&k=0&no_gap=0&offset=0&limit=47
0.261 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).