GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 04:11:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Callithrix jacchus chromosome 11 clone CH259-120B21, complete sequence.
AC279259.1:67955-67974
TAAGAGCCAGATGCTCAGACTTGTGAGCAT67955AGGTTCGGGGATGAGAGAGTTAAAGTGAAGTTATCTTCTGGCACTAATTC
Peromyscus eremicus genome assembly, chromosome: 4.
OX460397.1:103521986-103522005
AAGTAGACGGGGAGAATGCTGAGAACAGAA103521986AGGTTCGGGGATGAGAGAGTGGGTCGGGAAGGGGTGGAGGGCTTAGCCCA
Peromyscus eremicus genome assembly, chromosome: 4.
OX460469.1:105755769-105755788
AAGTAGACGGGGAGAATGCTGAGAACAGAA105755769AGGTTCGGGGATGAGAGAGTGGGTCGGGAAGGGGTGGAGGGCTTAGCCCA
NLL_002055 Normal leaf cDNA library of peanut (Arachis hypogaea) Arachis hypogaea cDNA clone ocpnla0_0025_A01.ab1, mRNA sequence.
JK169571.1:363-382
GGCGAGCTCATCAATGTTCACTATGCCGCA363AGGTTCGGGGATGAGAGAGTGTTTGATAGCAGCTACAAACGTGGCAGACC
RILL_002468 Ralstonia solanacearum challenged leaf cDNA library of peanut (Arachis hypogaea) Arachis hypogaea cDNA clone ocprla0_0029_G08.ab1, mRNA sequence.
JK191402.1:387-406
GGCGAGCTCATCAATGTTCACTATACCGCA387AGGTTCGGGGATGAGAGAGTGTTTGATAGCAGCTACAAACGTGGCAGACC
RILL_009021 Ralstonia solanacearum challenged leaf cDNA library of peanut (Arachis hypogaea) Arachis hypogaea cDNA clone ocprla0_0107_C03.ab1, mRNA sequence.
JK197955.1:366-385
GGCGAGCTCATCAATGTTCACTATACCGCA366AGGTTCGGGGATGAGAGAGTGTTTGATAGCAGCTACAAACGTGGCAGACC
Arachis hypogaea DNA, clone: 8iHA00A43, cultivar: YI-0311.
DE998455.1:147-166
TACCCTGCGCTGCAGGTTCACTATACCGCA147AGGTTCGGGGATGAGAGAGTGTTTGATAGCAGCTACAAACGTGGCAGACC
Callithrix jacchus clone CH259-40E8, WORKING DRAFT SEQUENCE, 4 ordered pieces.
AC202645.2:190048-190067
TAAGAGCCAGATGCTCAGACTTGTGAGCAT190048AGGTTCGGGGATGAGAGAGTTAAAGTGAAGTTATCTTCTGGCACTAATTC
TOG908531_1 Arachis duranensis Grif 15036 (Dur2-1) STS genomic PCR amplicon Arachis duranensis STS genomic, sequence tagged site.
GF111786.1:221-240
TACCCTGCGCTGCAGGTTCACTATACCGCA221AGGTTCGGGGATGAGAGAGTGTTTGATAGCAGCTACAAACGTGGCAGACC
Callithrix jacchus chromosome chr11 clone CH259-40E8, complete sequence.
AC275478.1:7461-7480
GAATTAGTGCCAGAAGATAACTTCACTTTA7461ACTCTCTCATCCCCGAACCTATGCTCACAAGTCTGAGCATCTGGCTCTTA
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:124496457-124496476
GGTCTGCCACGTTTGTAGCTGCTATCAAAC124496457ACTCTCTCATCCCCGAACCTTGCGGTATAGTGAACCTGCAGCGCAGGGTA
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:126215806-126215825
GGTCTGCCACGTTTGTAGCTGCTATCAAAC126215806ACTCTCTCATCCCCGAACCTTGCGGTATAGTGAACCTGCAGCGCAGGGTA
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:123975613-123975632
GGTCTGCCACGTTTGTAGCTGCTATCAAAC123975613ACTCTCTCATCCCCGAACCTTGCGGTATAGTGAACCTGCAGCGCAGGGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGGTTCGGGGATGAGAGAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGTTCGGGGATGAGAGAGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.411 | 0.403 | search_plus_done; http://172.18.8.135:50400/match?q=AGGTTCGGGGATGAGAGAGT&k=0&no_gap=0&offset=0&limit=50
0.435 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=ACTCTCTCATCCCCGAACCT&k=0&no_gap=0&offset=0&limit=41
0.438 | 0.003 | cgi_end;

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