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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:40:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:248047715-248047734
GGATCAACAGTATCGTTTGAATGCTAGTCG248047715AGGTTCTGAGGCAACTCCAACATGGGTAGACCAGCTATACATGGAGCAGG
Capsicum annuum Cys-3-His zinc finger protein (KR1) mRNA, partial cds.
DQ862464.1:1998-2017
GGATCAACAGTATCGTTTGAATGCTAGTCG1998AGGTTCTGAGGCAACTCCAACATGGGTAGACCAGCTATACATGGAGCAGG
KS16034A12 KS16 Capsicum annuum cDNA, mRNA sequence.
GD072597.1:393-412
CCTGCTCCATGTATAGCTGGTCTACCCATG393TTGGAGTTGCCTCAGAACCTCGACTAGCATTCAAACGATACTGTTGATCC
KS17027F12 KS17 Capsicum annuum cDNA, mRNA sequence.
GD078047.1:399-418
CCTGCTCCATGTATAGCTGGTCTACCCATG399TTGGAGTTGCCTCAGAACCTCGACTAGCATTCAAACGATACTGTTGATCC
KS20002G12 KS20 Capsicum annuum cDNA, mRNA sequence.
GD093533.1:394-413
CCTGCTCCATGTATAGCTGGTCTACCCATG394TTGGAGTTGCCTCAGAACCTCGACTAGCATTCAAACGATACTGTTGATCC
KS24033F02 KS24 Capsicum annuum cDNA, mRNA sequence.
GD120967.1:417-436
CCTGCTCCATGTATAGCTGGTCTACCCATG417TTGGAGTTGCCTCAGAACCTCGACTAGCATTCAAACGATACTGTTGATCC
TSA: Moniezia expansa Unigene38972_136 mRNA sequence.
JL294357.1:184-203
TTGTTCTTCTGAAAACAATCATGAGCCTAT184TTGGAGTTGCCTCAGAACCTATCAGTCTGCTTCAGCCCCA
TSA: Capsicum annuum MGMT_Contig38077 mRNA sequence.
JW088321.1:405-424
CCTGCTCCATGTATAGCTGGTCTACCCATG405TTGGAGTTGCCTCAGAACCTCGACTAGCATTCAAACGATACTGTTGATCC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:5501155-5501174
CCTGCTCCATGTATAGCTGGTCTACCCATG5501155TTGGAGTTGCCTCAGAACCTCGACTAGCATTCAAACGATACTGTTGATCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGGTTCTGAGGCAACTCCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGTTCTGAGGCAACTCCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.335 | 0.326 | search_plus_done; http://172.18.8.135:50400/match?q=AGGTTCTGAGGCAACTCCAA&k=0&no_gap=0&offset=0&limit=50
0.972 | 0.636 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGAGTTGCCTCAGAACCT&k=0&no_gap=0&offset=0&limit=48
0.976 | 0.005 | cgi_end;

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