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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 08:05:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KR 1020220135918-A/83: SNP markers and primer sets for high-throughput identification of cabbage cultivar and uses thereof.
PE014955.1:976-995
CGTATACGCTTCGTCAGCAGCATCCGGTTG976AGTACACGGTGCCTATTCAGTTGCCRGTGATTAACCAAGTGTTTGGTACT
Brassica oleracea var. viridis mRNA, clone: KALE-121G08, 5' end sequence.
DK501972.1:734-753
CGTATACGCTTCGTCAGCAGCATCCGGTTG734AGTACACGGTGCCTATTCAGTTGCCGGTGATTAACCAAGTGTTTGGTACT
Brassica oleracea var. viridis mRNA, clone: KALE-122B03, 5' end sequence.
DK502229.1:497-516
CGTATACGCTTCGTCAGCAGCATCCTGTTG497AGTACACGGTGCCTATTCAGTTGCCGGTGATTAACCAAGTGTTTGGTACT
BNARO4GH_T3_005_D05_24NOV2006_041 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES902782.1:712-731
CGTATACGCTTCGTCAGCAGCATCCCGTTG712AGTACACGGTGCCTATTCAGTTGCCGGTGATTAACCAAGTGTTTGGTACT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_24952.
FX742948.1:596-615
CGTATACGCTTCGTCAGCAGCATCCTGTTG596AGTACACGGTGCCTATTCAGTTGCCGGTGATTAACCAGGTGTTTGGGACT
Brassica oleracea ethylene receptor (ETR1) mRNA, complete cds.
AF047476.1:611-630
CGTATACGCTTCGTCAGCAGCATCCGGTTG611AGTACACGGTGCCTATTCAGTTGCCAGTGATTAACCAAGTGTTTGGTACT
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:46897855-46897874
CGTATACGCTTCGTCAGCAGCATCCCGTTG46897855AGTACACGGTGCCTATTCAGTTGCCGGTGATTAACCAAGTGTTTGGTACT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:40892845-40892864
CGTATACGCTTCGTCAGCAGCATCCCGTTG40892845AGTACACGGTGCCTATTCAGTTGCCGGTGATTAACCAAGTGTTTGGTACT
Brassica rapa genome, scaffold: A07.
LR031574.1:22358830-22358849
CGTATACGCTTCGTCAGCAGCATCCTGTTG22358830AGTACACGGTGCCTATTCAGTTGCCGGTGATTAACCAGGTGTTTGGGACT
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:37522105-37522124
CGTATACGCTTCGTCAGCAGCATCCGGTTG37522105AGTACACGGTGCCTATTCAGTTGCCGGTGATTAACCAAGTGTTTGGTACT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:22650050-22650069
CGTATACGCTTCGTCAGCAGCATCCTGTTG22650050AGTACACGGTGCCTATTCAGTTGCCGGTGATTAACCAGGTGTTTGGGACT
Brassica oleracea putative ethylene receptor (BOETR1) gene, partial cds.
U87238.1:77-96
CGTATACGCTTCGTCAGCAGCATCCCGTTG77AGTACACGGTGCCTATTCAGTTGCCGGTGATTAACCAAGTGTTTGGTACT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14077.
FX693372.1:1766-1785
AGTCCCAAACACCTGGTTAATCACCGGCAA1766CTGAATAGGCACCGTGTACTCAACAGGATGCTGCTGACGAAGCGTATACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGTACACGGTGCCTATTCAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTACACGGTGCCTATTCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.430 | 0.421 | search_plus_done; http://172.18.8.135:50400/match?q=AGTACACGGTGCCTATTCAG&k=0&no_gap=0&offset=0&limit=50
0.547 | 0.117 | search_minus_done; http://172.18.8.135:50400/match?q=CTGAATAGGCACCGTGTACT&k=0&no_gap=0&offset=0&limit=38
0.548 | 0.001 | cgi_end;

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