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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 03:45:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GH_TMIRS_153_C04_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW511433.1:303-322
AACCCGTCACGGTGGCCTTTTGTTGTTTTA303AGTCCACGTCCACAGACTTTGCCCCCTTTACGCCGGAGAGGACCTTCTTG
rayctn0_0061_C11.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO093882.1:496-515
AACCCGTCACAGTGGCCTTTTGTTGTTTTA496AGTCCACGTCCACAGACTTTGCCCCCTTTA
rayctn0_0134_E08.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO099568.1:326-345
AACCCGTCACGGTGGCCTTTTGTTGTTTTA326AGTCCACGTCCACAGACTTTGCCCCCTTTACGCCGGAGAGGACCTTCTTG
rayctn0_0163_E04.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO101859.1:454-473
AACCCGTCACGGTGGCCTTTTGTTGTTTTA454AGTCCACGTCCACAGACTTTGCCCCCTTTACGCCGGAGAGGACCTTCTTG
Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.
AC243121.1:81313-81332
AACCCGTCACGGTGGCCTTTTGTTGTTTTA81313AGTCCACGTCCACAGACTTTGCCCCTACCAAAATCCAGCATTAATTTATA
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:51547684-51547703
AACCCGTCACGGTGGCCTTTTGTTGTTTTA51547684AGTCCACGTCCACAGACTTTGCCCCTACCAAAATCCAGCATTAATTTATA
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:118680198-118680217
AACCCGTCACGGTGGCCTTTTGTTGTTTTA118680198AGTCCACGTCCACAGACTTTGCCCCTACCAAAATCCAGCATTAATTTCTA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:121655329-121655348
AACCCGTCACGGTGGCCTTTTGTTGTTTTA121655329AGTCCACGTCCACAGACTTTGCCCCTACCAAAATCCAGCATTAATTTATA
GR__Ea39G21.r GR__Ea Gossypium raimondii cDNA clone GR__Ea39G21 3', mRNA sequence.
CO077579.1:185-204
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC185AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
GR__Ea39G22.r GR__Ea Gossypium raimondii cDNA clone GR__Ea39G22 3', mRNA sequence.
CO077581.1:187-206
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC187AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
CM053B12 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR457242.1:409-428
CAAGAAGGTCCTCTCCGGCGTANAGGGGGC409AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
GH_LSL06F05.f GH_LSL Gossypium hirsutum cDNA clone GH_LSL06F05 5', mRNA sequence.
DV849081.1:309-328
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC309AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
GH_TMIRS_153_C04_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW511432.1:322-341
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC322AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
010A01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV482077.1:170-189
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC170AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
094E02 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV486129.1:167-186
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC167AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
206H02 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV491289.1:176-195
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC176AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
sg109B11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV497149.1:186-205
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC186AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
mhczaa0_021423.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_021423.z1, mRNA sequence.
JG837502.1:485-504
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC485AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
mhczaa0_025134.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_025134.z1, mRNA sequence.
JG838242.1:497-516
CAAGAAGGCCCTCTCCGGCGTAAAGGGGGC497AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
B06-GC3921 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK801559.1:365-384
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC365AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
C09-GC7371 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK803722.1:197-216
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC197AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
B08-GC1122 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK804246.1:202-221
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC202AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
H04-GC8104 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK805658.1:147-166
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC147AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
C05-GC3934 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK809123.1:197-216
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC197AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
F10-GC10934 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810472.1:365-384
CAAGAAGGTCCTCTCCGGCGTAAAGGGGGC365AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:5408200-5408219
TATAAATTAATGCTGGATTTTGGTAGGGGC5408200AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:7066821-7066840
TAGAAATTAATGCTGGATTTTGGTAGGGGC7066821AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:11248678-11248697
TATAAATTAATGCTGGATTTTGGTAGGGGC11248678AAAGTCTGTGGACGTGGACTTAAAACAACAAAAGGCCACCGTGACGGGTT

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