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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 14:12:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 17 from patent US 7728194.
GX273041.1:1-27
1AGTCCACTTGAACAATTTGAAATAATC
Capsicum annuum ATP synthase subunit 6-2 (atp6-2) pseudogene, complete sequence; mitochondrial.
DQ126680.1:499-525
ATTGTAGGGGGGACACCTCCGACGATCACC499AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTA
Capsicum annuum ATP synthase subunit 6-2 (atp6-2) gene, complete cds; mitochondrial.
DQ126681.1:499-525
ATTGTAGGGGGGACACCTCCGACGATCACC499AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTA
Capsicum annuum ATP synthase subunit 6-1 (atp6-1) gene, complete cds; mitochondrial.
DQ126682.1:58-84
TTCACACTGGATCTAGCGCAGATCGTCTCC58AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTA
Capsicum annuum F0-ATPase subunit 6 (atp6) gene, partial cds; mitochondrial.
FJ986191.1:1-27
1AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTA
Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome.
KJ865409.1:263241-263267
ATTGTAGGGGGGACACCTCCGACGATCACC263241AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTA
Capsicum annuum cultivar Jeju mitochondrion, complete genome.
KJ865410.1:217377-217403
ATTGTAGGGGGGACACCTCCGACGATCACC217377AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTA
Boholia sp. Bicknell 1561A voucher In cult. Phillipines, Bicknell 1561A ATP synthase F0 subunit 6 (atp6) gene, partial cds; mitochondrial.
KY638790.1:1-27
1AGTCCACTTGAACAATTTGAAATAATCCCATTTCTTCCTATGAAGATTGGAGACTTG
UNVERIFIED: Capsicum annuum cell line CMS line 138A mitochondrion sequence, sequence.
MK225636.1:263312-263338
ATTGTAGGGGGGACACCTCCGACGATCACC263312AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTA
UNVERIFIED: Capsicum annuum cell line CMS line 138B mitochondrion sequence, sequence.
MK225637.1:217409-217435
ATTGTAGGGGGGACACCTCCGACGATCACC217409AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTA
Solanum melongena isolate NN11 chromosome 1, complete sequence.
MT122956.1:27143-27169
ATTGTAGGGGGGACACCTCCGACGATCACC27143AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTC
Solanum melongena isolate NN8 chromosome 1, complete sequence.
MT122960.1:27143-27169
ATTGTAGGGGGGACACCTCCGACGATCACC27143AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTC
Solanum melongena isolate NN7 chromosome 1, complete sequence.
MT122967.1:27143-27169
ATTGTAGGGGGGACACCTCCGACGATCACC27143AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTC
Solanum macrocarpon isolate NN6 chromosome 1, complete sequence.
MT122970.1:1853-1879
ATTGTAGGGGGGACACCTCCGACGATCACC1853AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTC
Solanum macrocarpon isolate NN6 chromosome 2 mitochondrion, complete sequence.
MT122971.1:28022-28048
ATTGTAGGGGGGACACCTCCGACGATCACC28022AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTC
Solanum melongena isolate NN18 chromosome 1, complete sequence.
MT122975.1:21265-21291
ATTGTAGGGGGGACACCTCCGACGATCACC21265AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTC
Solanum melongena isolate NN10 chromosome 1, complete sequence.
MT122984.1:21321-21347
ATTGTAGGGGGGACACCTCCGACGATCACC21321AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTC
Solanum melongena isolate NN5 chromosome 1, complete sequence.
MT122986.1:21340-21366
ATTGTAGGGGGGACACCTCCGACGATCACC21340AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTC
Capsicum annuum mitochondrion, complete genome.
MZ520998.1:179783-179809
ATTGTAGGGGGGACACCTCCGACGATCACC179783AGTCCACTTGAACAATTTGAAATAATCCCATTGATTCCTATGAAAATAGGAAACTTA
TSA: Capsicum annuum MGMT_Contig5750, mRNA sequence.
JW055994.1:348-374
TAAGTTTCCTATTTTCATAGGAATCAATGG348GATTATTTCAAATTGTTCAAGTGGACTGGTGATCGTCGGAGGTGTCCCCCCTACAAT
Solanum melongena isolate NN20 mitochondrion, complete genome.
MT122962.1:124442-124468
GAAGTTTCCTATTTTCATAGGAATCAATGG124442GATTATTTCAAATTGTTCAAGTGGACTGGTGATCGTCGGAGGTGTCCCCCCTACAAT
Solanum melongena isolate NN19 mitochondrion, complete genome.
MT122963.1:124432-124458
GAAGTTTCCTATTTTCATAGGAATCAATGG124432GATTATTTCAAATTGTTCAAGTGGACTGGTGATCGTCGGAGGTGTCCCCCCTACAAT
Solanum torvum isolate NN12 chromosome 2, complete sequence.
MT122979.1:160603-160629
TAAGTTTCCTATTTTCATAGGAATCAATGG160603GATTATTTCAAATTGTTCAAGTGGACTGGTGGTCGTCGGAGGTGTCCCCCCTACAAT
Solanum anguivi isolate NN14 chromosome 1, complete sequence.
MT122980.1:92151-92177
GAAGTTTCCTATTTTCATAGGAATCAATGG92151GATTATTTCAAATTGTTCAAGTGGACTGGTGATCGTCGGAGGTGTCCCCCCTACAAT
Solanum anguivi isolate NN13 chromosome 1, complete sequence.
MT122982.1:92566-92592
GAAGTTTCCTATTTTCATAGGAATCAATGG92566GATTATTTCAAATTGTTCAAGTGGACTGGTGATCGTCGGAGGTGTCCCCCCTACAAT
Solanum melongena cultivar EP28 mitochondrion, complete genome.
OR187865.1:170246-170272
GAAGTTTCCTATTTTCATAGGAATCAATGG170246GATTATTTCAAATTGTTCAAGTGGACTGGTGATCGTCGGAGGTGTCCCCCCTACAAT
UNVERIFIED: Solanum commersonii isolate C559_01 mitochondrion sequence, sequence.
OR906513.1:321387-321413
TAAGTTTCCTATTTTCATAGGAATCAATGG321387GATTATTTCAAATTGTTCAAGTGGACTGGTGATCGTCGGAGGTGTCCCCCCTACAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTCCACTTGAACAATTTGAAATAATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTCCACTTGAACAATTTGAAATAATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.301 | 0.293 | search_plus_done; http://172.18.8.135:50400/match?q=AGTCCACTTGAACAATTTGAAATAATC&k=0&no_gap=0&offset=0&limit=50
0.410 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=GATTATTTCAAATTGTTCAAGTGGACT&k=0&no_gap=0&offset=0&limit=31
0.416 | 0.006 | cgi_end;

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