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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 23:11:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRCS03_05J16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05J16, mRNA sequence.
CF838022.1:30-49
GGCGGCGCTCAGAATAGTGGAGCCGCCCG30AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACACACACACACA
UCRCS03_05N05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N05, mRNA sequence.
CF838148.1:7-26
AGGCCG7AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACACACACACACA
UCRCS03_06I15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I15, mRNA sequence.
CF838423.1:28-47
CGGCGCTCAGAATAGTGGAGCCGCCCG28AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACACACACACACA
IC0AAA22AH02RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY267711.1:16-35
CTCAGGAGCCGCCCG16AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACACACACACACA
IC0AAA22BG02RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY267791.1:16-35
CTCAGGAGCCGCCCG16AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACACACACACACA
IC0AAA39AD11RM2 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY275327.1:10-29
AGCCGCCCG10AGTCCGCCTTTGCTTTTTCTCTCTCTCTCACACACACACACACACACACA
IC0AAA3AA10RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY275660.1:3-22
CG3AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACACACACACACA
KN0AAQ11YF13RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY300810.1:10-29
AGCCCCTTG10AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACCTTTACACACA
KN0AAQ6YJ17RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY303719.1:16-35
CTCAGGATCCGCCCG16AGTCCGCCTTTGCTTTTTCTCTCTCTCTCACACTCACACACACACACACA
CS00-C2-003-028-D08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY685867.1:21-40
CCACGCGTCCGAGCCGCCCG21AGTCCGCCTTTGCTTTTTCTCTCTAACACACACACACACACACACACACA
CS00-C3-704-001-H05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY728288.1:30-49
CCACGCGTCCGCGGACGCGTGGGCGCCCG30AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACACACACACACA
CR05-C3-700-063-B02-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY785200.1:24-43
CCACGCGTTCCGGGAGCCGCCCG24AGTCCGCCTTTGCTTTTTCTCTCTAACACACACACACACACACACACACA
IC0AAA39AD11RM2 IVIA1 Citrus clementina cDNA clone IC0AAA39AD11, mRNA sequence.
FC888944.1:10-29
AGCCGCCCG10AGTCCGCCTTTGCTTTTTCTCTCTCTCTCACACACACACACACACACACA
KN0AAQ11YF13RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ11YF13, mRNA sequence.
FC894869.1:10-29
AGCCCCTTG10AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACCTTTACACACA
KN0AAQ6YJ17RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ6YJ17, mRNA sequence.
FC899472.1:16-35
CTCAGGATCCGCCCG16AGTCCGCCTTTGCTTTTTCTCTCTCTCTCACACTCACACACACACACACA
IC0AAA22AH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22AH02, mRNA sequence.
FC901431.1:16-35
CTCAGGAGCCGCCCG16AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACACACACACACA
IC0AAA22BG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22BG02, mRNA sequence.
FC906862.1:16-35
CTCAGGAGCCGCCCG16AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACACACACACACA
IC0AAA3AA10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3AA10, mRNA sequence.
FC907077.1:10-29
AGCCGCCCG10AGTCCGCCTTTGCTTTTTCTCTCTCTCACACACACACACACACACACACA
Nemapogon koenigi genome assembly, chromosome: 24.
OZ004653.1:702768-702787
GGAGTGCGCGCAACTGGCAGAACATAATAC702768AGTCCGCCTTTGCTTTTTCTCAGCTTGAAGGACCCCAGGGGGATTAGCAT
17000417976177 GRN_EB Homo sapiens cDNA 5', mRNA sequence.
CN315055.1:188-207
TCAGACCAGGCCCCCAATCTCCTCCCCACA188AGAAAAAGCAAAGGCGGACTGAAAACCTGTTGCCAAAGGAAGGGAACACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTCCGCCTTTGCTTTTTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTCCGCCTTTGCTTTTTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.936 | 0.927 | search_plus_done; http://172.18.8.135:50400/match?q=AGTCCGCCTTTGCTTTTTCT&k=0&no_gap=0&offset=0&limit=50
0.994 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=AGAAAAAGCAAAGGCGGACT&k=0&no_gap=0&offset=0&limit=31
0.995 | 0.001 | cgi_end;

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