GGGenome | Results

2025-04-09 17:24:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021E01, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC232461.1:26990-27011

AAGTTCAAATTGGTATATCATAGCATTCTC26990AGTCGGAGGAAACGCGAAATTAAACTCTATATATATATATATATATATATAT

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
AC189319.1:99799-99820

AAGTTCAAATTGGTATATCATAGCATTCTC99799AGTCGGAGGAAACGCGAAATTAAACTCTATATATATATATATATATATATAT

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:61756571-61756592

AAGTTCAAATTGGTATATCATAGCATTCTC61756571AGTCGGAGGAAACGCGAAATTAAACTCTATATATATATATATATATATATAT

Brassica napus genome assembly, chromosome: A09.
HG994363.1:45577641-45577662

AAGTTCAAATTGGTATATCATAGCATTCTC45577641AGTCGGAGGAAACGCGAAATTAAACTCTATCTATCTATATATATATATTGTT

Brassica rapa genome, scaffold: A09.
LR031568.1:49896238-49896259

AAGTTCAAATTGGTATATCATGGCATTTTC49896238AGTCGGAGGAAACGCGAAATTAAACTCTATATATATATATCTTGTTGTCAAC

Brassica rapa genome assembly, chromosome: A09.
LS974625.2:60368257-60368278

AAGTTCAAATTGGTATATCATGGCATTTTC60368257AGTCGGAGGAAACGCGAAATTAAACTCTATATATATATATCTTGTTGTCAAC

KBrH085D17R KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH085D17, genomic survey sequence.
DU990113.1:126-147

ACAACAAGATATATATATATATATAGAGTT126TAATTTCGCGTTTCCTCCGACTGAAAATGCCATGATATACCAATTTGAACTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.114 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=AGTCGGAGGAAACGCGAAATTA&k=0&no_gap=0&offset=0&limit=50
0.165 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=TAATTTCGCGTTTCCTCCGACT&k=0&no_gap=0&offset=0&limit=44
0.166 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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