GGGenome | Results

2025-04-08 22:54:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Echiichthys vipera genome assembly, chromosome: 6.
OY829651.1:14585857-14585875

GTGGGTGTAAAGAAAAACAAAAACAAAATC14585857AGTCTCCCATTTATGGTCTATGGAGCAGGTTCAGCCTTTTGACTTGGTG

GQ0032.TB_K11 GQ003: Vegetative buds developmental sequence Picea glauca cDNA clone GQ0032_K11 3', mRNA sequence.
CK439448.2:373-391

CCAATAGCTGAGACGAATCCGAGCATGGCG373AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAGGCAAAAACGT

GQ0011.TB_I09 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0011_I09 3', mRNA sequence.
CK442037.2:392-410

CAAATAGCTGAGACGAATCCGAGCATTGCC392AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCCGAATGCAAAAACGT

GQ0013.TB.1_H14 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0013_H14 3', mRNA sequence.
CK442573.2:390-408

CCAATAGCCGAGACGAATCCGAGCATGGCC390AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCCGAATGCAAAAACGT

GQ0015.TB.1_D13 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0015_D13 3', mRNA sequence.
CK443675.2:359-377

CAAATAGCTGAGACGAATCCGAGCATTGCC359AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCCGAATGCAAAAACGT

WS0064.B21_F19 IS-B-A-7 Picea engelmannii x Picea glauca cDNA clone WS0064_F19 3', mRNA sequence.
CO205543.1:400-418

CCAACAGCTGAGACGAATCCGAGCATGGCG400AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAATGT

WS0011.B21_P05 WS-ES-A-1 Picea glauca cDNA clone WS0011_P05 3', mRNA sequence.
CO227384.1:439-457

CCAATAGCTGAGACGAATCCGAGCATGGCC439AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCACCGAAGGCAAACAGGT

WS0011.B21_K19 WS-ES-A-1 Picea glauca cDNA clone WS0011_K19 3', mRNA sequence.
CO227502.1:380-398

CAAATAGCTGAGACGAATCCGAGCATTGCC380AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAATGCAAAAACGT

WS0012.B21_C16 WS-ES-A-1 Picea glauca cDNA clone WS0012_C16 3', mRNA sequence.
CO227602.1:184-202

CCAACAGCTGAGACGAATCCGAGCATGGCG184AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAATGT

WS0014.B21_H17 WS-ES-A-1 Picea glauca cDNA clone WS0014_H17 3', mRNA sequence.
CO228338.1:423-441

CAAATAGCTGAGACGAATCCGAGCATTGCC423AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCCGAATGCAAAAACGT

WS0015.B21_K18 WS-ES-A-1 Picea glauca cDNA clone WS0015_K18 3', mRNA sequence.
CO228749.1:427-445

CCAATAGCCGAGACGAATCCGAGCATGGCC427AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCCGAATGCAAAAACGT

WS0016.B21_M14 WS-ES-A-1 Picea glauca cDNA clone WS0016_M14 3', mRNA sequence.
CO229099.1:424-442

CCAATAGCCGAGACGAATCCGAGCATGGCC424AGTCTCCCATTTATGGTCTCTGGCGCTGGCCC

WS0018.B21_C23 WS-ES-A-1 Picea glauca cDNA clone WS0018_C23 3', mRNA sequence.
CO229518.1:423-441

CCAATAGCCGAGACGAATCCGAGCATGGCC423AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCCGAATGCAAAAACGT

WS00110.B21_A06 WS-ES-A-1 Picea glauca cDNA clone WS00110_A06 3', mRNA sequence.
CO229797.1:431-449

CAAATAGCTGAGACGAATCCGAGCATTGCC431AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAATGCAAAAACGT

GQ0174.TB_G06 GQ017: Immature somatic EMBRYOS Picea glauca cDNA clone GQ0174_G06 3', mRNA sequence.
CO478795.2:553-571

CCAACAGCTGAGACGAATCCGAGCATGGCC553AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAGGCAAAAACGT

GQ0161.TB_J11 GQ016: Primary, secondary SHOOT -N fertil. Treatments Picea glauca cDNA clone GQ0161_J11 3', mRNA sequence.
CO480766.2:602-620

CCAACAGCTGAGACGAATCCGAGCATGGCC602AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAGGCAAAAACGT

GQ0166.B7_E02 GQ016: Primary, secondary SHOOT -N fertil. Treatments Picea glauca cDNA clone GQ0166_E02 3', mRNA sequence.
CO480964.2:614-632

CCAACAGCTGAGACGAATCCGAGCATGGCC614AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAGGCAAAAACGT

GQ0252.B7_K17 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0252_K17 3', mRNA sequence.
CO487875.2:629-647

CCAACAGCTGAGACGAATCCGAGCATGGCC629AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAGGCAAAAACGT

GQ0254.B7_I19 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0254_I19 3', mRNA sequence.
CO487987.2:385-403

CCAACAGCTGAGACGAATCCGAGCATGGCC385AGTCTCCCATTTATGGTCTCTGGCGCCGGCCCGCTGAAGGCAAAAACGT

WS00944.B21_J08 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00944_J08 3, mRNA sequence.
DR468308.1:635-653

CCAACAGCTGAGACAAATCCGAGCATGGCC635AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAGGCAAAAACGT

WS02812.CR_I08 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02812_I08 3, mRNA sequence.
DR478197.1:397-415

CCAACAGCTGAGACGAATCCGAGCATGGCG397AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAATGT

WS02916.CR_K04 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02916_K04 3, mRNA sequence.
DR491120.1:554-572

CCAACAGCTGAGACGAATCCGAGCATGGCC554AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAGGCAAAAACGT

WS02719.BR_F12 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02719_F12 3, mRNA sequence.
DR507148.1:603-621

CCAACAGCTGAGACAAATCCGAGCATGGCC603AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAGGCAAAAACGT

WS02742.CR_G06 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02742_G06 3, mRNA sequence.
DR516070.1:421-439

CCAACAGCTGAGACGAATCCGAGCATGGCC421AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAGGCAAAAACGT

WS02750.CR_C12 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02750_C12 3, mRNA sequence.
DR518764.1:398-416

CCAACAGCTGAGACGAATCCGAGCATGGCG398AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAATGT

WS03222.C21_B05 WS-MC-N-A-20 Picea glauca cDNA clone WS03222_B05 3, mRNA sequence.
DR552030.1:464-482

CCAACAGCTGAGACGAATCCGAGCATGGCC464AGTCTCCCATTTATGGTCTCTGGCGCTGGTCCACCGAAGGCAAACAGGT

WS03228.C21_K01 WS-MC-N-A-20 Picea glauca cDNA clone WS03228_K01 3, mRNA sequence.
DR554325.1:424-442

CCAACAGCTGAGACGAATCCGAGCATGGCC424AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAGGCAAAAACGT

WS00728.B21_I19 WS-PS-N-A-8 Picea glauca cDNA clone WS00728_I19 3, mRNA sequence.
DR571244.1:697-715

CCAACAGCTGAGACGAATCCGAGCATGGCC697AGTCTCCCATTTATGGTCTCTGGCGCCGGCCCGCTGAAGGCAAAAACGT

WS00732.B21_O06 WS-PS-N-A-8 Picea glauca cDNA clone WS00732_O06 3, mRNA sequence.
DR572746.1:401-419

CCAACAGCTGAGACGAATCCGAGCATGGCG401AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAACGT

WS00745.C21_P02 WS-PS-N-A-8 Picea glauca cDNA clone WS00745_P02 3, mRNA sequence.
DR577318.1:395-413

CCAACAGCCGAGACGAATCCGAGCATGGCG395AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAACGT

WS0332.C21_G11 WS-SE-N-A-18 Picea glauca cDNA clone WS0332_G11 3, mRNA sequence.
DR583022.1:384-402

CCAACAGCCGAGACGAATCCGAGCATGGCG384AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAGAGCAAAAACGT

GQ0252.B7_D14 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0252_D14 3', mRNA sequence.
DV990781.2:460-478

CCAACAGCTGAGACGAATCCGAGCATGGCG460AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAACGT

WS0403.C21_B18 SS-S-25 Picea sitchensis cDNA clone WS0403_B18 3', mRNA sequence.
ES262652.1:389-407

CCAACAGCTGAGACGAATCCGAGCATGGCG389AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAATGT

WS0428.C21_P20 SS-NE-27 Picea sitchensis cDNA clone WS0428_P20 3', mRNA sequence.
ES671555.1:410-428

CCAACAGCTGAGACGAACCCGAGCATGGCC410AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCACCGAAGGCAAACAAGT

GQ03113.SP6_H09 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03113_H09 3', mRNA sequence.
EX354045.1:587-605

CCAACAGCTGAGACGAATCCGAGCATGGCC587AGTCTCCCATTTATGGTCTCTGGCGCCGGCCCGCTGAAGGCAAAAACGT

WS04222.C21_B09 SS-NE-27 Picea sitchensis cDNA clone WS04222_B09 3', mRNA sequence.
FD743000.1:433-451

CCAACAGCTGAGACGAACCCGAGCATGGCC433AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCACCGAAGGCAAACAAGT

WS0431.C21_G12 SS-NE-28 Picea sitchensis cDNA clone WS0431_G12 3', mRNA sequence.
FD747080.1:416-434

CCAATAGCCGAGACGAATCCGAGCATGGCC416AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCCGAAGGCAAACAAGT

WS0431.C21_N24 SS-NE-28 Picea sitchensis cDNA clone WS0431_N24 3', mRNA sequence.
FD747237.1:384-402

CCAACAGCTGAGACGAATCCGAGCATGGCG384AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAATGT

WS0434.C21_G11 SS-NE-28 Picea sitchensis cDNA clone WS0434_G11 3', mRNA sequence.
FD747966.1:397-415

CCAACAGCTGAGACGAATCCGAGCATGGCG397AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAATGT

GQ03511.SP6.r_A10 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03511_A10 3', mRNA sequence.
GO365186.1:414-432

CCAATAGCCGAGACGAATCCGAGCATGGCC414AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCCGAATGCAAAAACGT

GQ03606.SP6.r_A02 GQ036 - Shoot tip - Active growth Picea glauca cDNA clone GQ03606_A02 3', mRNA sequence.
GR222964.1:491-509

CCAACAGCTGAGACAAATCCCAACATGGCC491AGTCTCCCATTTATGGTCTCTGGGGCTGGGCCACCGAAAGCAAACAGGT

GQ03906.SP6.r_C09 GQ039 - Stem - Dormant Picea glauca cDNA clone GQ03906_C09 3', mRNA sequence.
GR223190.1:626-644

CCAACAGCTGAGACGAATCCGAGCATGGCC626AGTCTCCCATTTATGGTCTCTGGCGCCGGCCCGCTGGAGGCAAAAACGT

GQ03914.B7P2_H04 GQ039 - Stem - Dormant Picea glauca cDNA clone GQ03914_H04 5', mRNA sequence.
GT052551.1:482-500

CCAACAGCTGAGACGAATCCGAGCATGGCC482AGTCTCCCATTTATGGTCTCTGGCGCCGGCCCGCTGAAGGCAAAAACGT

WS0492.CR_K01 WS-CBM-34 Picea glauca cDNA clone WS0492_K01 3', mRNA sequence.
GW732926.1:479-497

CCAACAGCTGAGACGAATCCGAGCATGGCG479AGTCTCCCATTTATGGTCTCTGGCGCTGGCCCGCTGAAAGCAAAAATGT

Pinus sylvestris EST, clone WZ0APSCA6YC07NM1.
HE625887.1:420-438

CCCAGAGCTGAGACGAATCCGAGCATTGCT420AGTCTCCCATTTATGGTCTCTGGTGCAGGCCCACCGAAAGCAAAAACGT

Pinus sylvestris EST, clone WZ0APSBA1YJ21NM1.
HE628277.1:387-405

CCCACGGCCGAGACGAATCCGAGCATGGCG387AGTCTCCCATTTATGGTCTCCGGCGCTGGTCCCGCGAAAGCAAACACGT

Pinus sylvestris EST, clone WZ0APSBA1YK23NM1.
HE628309.1:392-410

CCCACGGCCGAGACGAATCCGAGCATGGCG392AGTCTCCCATTTATGGTCTCCGGCGCTGGTCCCGCGAAAGCAAACACGT

Pinus sylvestris EST, clone WZ0APSBA1YN22NM1.
HE628395.1:448-466

CCCACGGCCGAGACGAATCCGAGCATGGCG448AGTCTCCCATTTATGGTCTCCGGCGCTGGTCCCCCGAAAGCAAACACGT

Pinus sylvestris EST, clone WZ0APSBA2YP19NM1.
HE628962.1:372-390

CCCACGGCCGAGACGAATCCGAGCATGGCG372AGTCTCCCATTTATGGTCTCCGGCGCTGGTCCCGCGAAAGCAAACACGT

Pinus sylvestris EST, clone WZ0APSBA3YB01NM1.
HE629011.1:459-477

CCCACGGCCGAGACGAATCCGAGCATGGCG459AGTCTCCCATTTATGGTCTCCGGCGCTGGTCCCGCGAAAGCAAACACGT

Pinus sylvestris EST, clone WZ0APSBA3YH19NM1.
HE629223.1:381-399

CCCACGGCCGAGACGAATCCGAGCATGGCG381AGTCTCCCATTTATGGTCTCCGGCGCTGGTCCCGCGAAAGCAAACACGT

Data Export:

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Debug Info:

0.008 | 0.008 | search_start;
2.542 | 2.533 | search_plus_done; http://172.18.8.135:50400/match?q=AGTCTCCCATTTATGGTCT&k=0&no_gap=0&offset=0&limit=50
2.609 | 0.067 | search_minus_done; http://172.18.8.135:50400/match?q=AGACCATAAATGGGAGACT&k=0&no_gap=0&offset=0&limit=0
2.609 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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