GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:22:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GM830005A20G03 Gm-r1083 Glycine max cDNA clone Gm-r1083-1830 3', mRNA sequence.
BI968473.1:471-490
CGCCTCCCGAATGCTGTGCAGCCCCTCCGC471AGTCTGCTTTATCCTCGCCACCGCGTCTTCCGGGGAGAGCCCCGGCTCGA
Glycine max cDNA clone: GMFL01-45-D15, 3'end.
BW679550.1:415-434
CGCCTCCCGAATGCTGTGCAGCCCCTCCGC415AGTCTGCTTTATCCTCGCCACCGCGTCTTCCGGGGAGAG
Glycine max cultivar Williams 82 chromosome 1.
CP126426.1:6043236-6043255
CGCCTCCCGAATGCTGTGCAGCCCCTCCGC6043236AGTCTGCTTTATCCTCGCCACCGCGTCTTCCGGGGAGAGCCCCGGCTCGA
Inga oerstediana genome assembly, chromosome: 11.
OY723409.1:33336191-33336210
CATCTCCCTCATGCTGTGCAGCCCCTCCGC33336191AGTCTGCTTTATCCTCGCCACTGAGTCCTCCGGCGACAGCCCCGGCTCGA
Inga leiocalycina genome assembly, chromosome: 11.
OY725330.1:40425206-40425225
CATCTCCCTCATGCTGTGCAGCCCCTCCGC40425206AGTCTGCTTTATCCTCGCCACTGAGTCCTCCGGCGACAGCCCCGGCTCGA
Sequence 2352 from Patent EP2148885.
HI531380.1:267-286
TCGAGCCGGGGCTCTCCCCGGAAGACGCGG267TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTCGGGAGGCG
Sequence 2352 from patent US 9271455.
HL704715.1:267-286
TCGAGCCGGGGCTCTCCCCGGAAGACGCGG267TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTCGGGAGGCG
sah81b04.y1 Gm-c1050 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1050-2360 5' similar to TR:Q9XI73 Q9XI73 F7A19.23 PROTEIN, mRNA sequence.
BI427515.1:124-143
TCGAGCCGGGGCTCTCCCCGGAAGACGCGG124TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTCGGGAGGCG
sai14h05.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-3418 5' similar to TR:Q9XI73 Q9XI73 F7A19.23 PROTEIN, mRNA sequence.
BI498496.1:298-317
TCGAGCCGGGGCTCTCCCCGGAAGACGCGG298TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTCGGGAGGCG
sam54h12.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-3432 5' similar to TR:Q9XI73 Q9XI73 F7A19.23 PROTEIN, mRNA sequence.
BM893348.1:61-80
TCGAGCCGGGGCTCTCCCCGGAAGACGCGG61TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTCGGGAGGCG
saq57e06.y1 Gm-c1076 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1076-4043 5' similar to TR:Q9XI73 Q9XI73 F7A19.23 PROTEIN, mRNA sequence.
BQ742905.1:319-338
TCGAGCCGGGGCTCTCCCCGGAAGACGCGG319TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTTCGGAAGCG
Glycine max cDNA clone: GMFL01-45-D15, 5'end.
BW679549.1:321-340
TCGAGCCGGGGCTCTCCCCGGAAGACGCGG321TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTCGGGAGGCG
Glycine max cDNA, clone: GMFL02-44-A01, 5'end.
DB970780.1:286-305
TCGAGCCGGGGCTCTCCCCGGAAGACGCGG286TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTCGGGAGGCG
Glycine max cDNA, clone: GMFL02-47-N17, 5'end.
DB972147.1:286-305
TCGAGCCGGGGCTCTCCCCGGAAGACGCGG286TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTCGGGAGGCG
Glycine max cDNA, clone: GMFL01-45-D15.
AK287145.1:321-340
TCGAGCCGGGGCTCTCCCCGGAAGACGCGG321TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTCGGGAGGCG
Inga laurina genome assembly, chromosome: 12.
OY979712.1:20306314-20306333
TCGAGCCCGGGCTGTCGCCGGAGGACTCAG20306314TGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATGAGGGAGATG
Cataclysta lemnata genome assembly, chromosome: 1.
OZ008339.1:6606358-6606377
GCACAATGTAAAATGGTGTTGTTCGAATTG6606358TGGCGAGGATAAAGCAGACTGCAAATTGTCACCTCTCCTGCGGGTATCGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTCTGCTTTATCCTCGCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTCTGCTTTATCCTCGCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.127 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=AGTCTGCTTTATCCTCGCCA&k=0&no_gap=0&offset=0&limit=50
0.337 | 0.210 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCGAGGATAAAGCAGACT&k=0&no_gap=0&offset=0&limit=45
0.345 | 0.008 | cgi_end;

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