GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:21:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

pPGPseq-5D05 pPGP Arachis hypogaea subsp. hypogaea genomic 5', genomic survey sequence.
CC000433.1:213-232
TATAAACCTCTTCTAGCTAATTGAACTCTT213AGTCTGTGCCTATGTTCGGCACAGGAGAGAGAGAGAGAGAGAGAGAGAGA
Arachis hypogaea DNA, clone: AHGS49E14.
DH961630.1:137-156
TATAAACCTCTTCTAGCTAATTGAACTCTT137AGTCTGTGCCTATGTTCGGCACAGGAGAGAGAGAGAGAGAGAGAGAGAGA
Arachis hypogaea cultivar Shitouqi chromosome A07.
CP030989.1:4279939-4279958
TCTCTCTCTCTCTCTCTCTCTCTCTCCTGT4279939GCCGAACATAGGCACAGACTAAGAGTTCAATTAGCTAGAAGAGGTTTATA
Arachis hypogaea cultivar Shitouqi chromosome B07.
CP030999.1:3823557-3823576
TCTCTCTCTCTCTCTCTCTCTCTCTCCTGT3823557GCCGAACATAGGCACAGACTAAGAGTTCAATTAGCTAGAAGAGGTTTATA
Arachis ipaensis cultivar K30076 chromosome 07.
CP049898.1:4547345-4547364
TCTCTCTCTCTCTCTCTCTCTCTCTCCTGT4547345GCCGAACATAGGCACAGACTAAGAGTTCAATTAGCTAGAAGAGGTTTATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTCTGTGCCTATGTTCGGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTCTGTGCCTATGTTCGGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.120 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=AGTCTGTGCCTATGTTCGGC&k=0&no_gap=0&offset=0&limit=50
0.140 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=GCCGAACATAGGCACAGACT&k=0&no_gap=0&offset=0&limit=48
0.142 | 0.002 | cgi_end;

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