GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 12:08:32, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:50715579-50715598
GATGAGTAGTCTACGGAGGTGTGGGGGGAG50715579AGTGAATCGATGATCTCGCCGTTGTCCACGATCTCCACTTGCGCCGCCAT
Brassica napus cultivar Xiang5A chromosome 7.
CP151902.1:32499790-32499809
GATGAGTAGTCTCCGGAGGCGTGGTGGGAG32499790AGTGAATCGATGATCTCGCCGTTGTCCACGATCTCCACTTGCGCCGCCAT
Brassica napus cultivar Xiang5A chromosome 16.
CP151911.1:50715579-50715598
GATGAGTAGTCTACGGAGGTGTGGGGGGAG50715579AGTGAATCGATGATCTCGCCGTTGTCCACGATCTCCACTTGCGCCGCCAT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:25454675-25454694
GATGAGTAGTCTCCGGAGGCGTGGTGGGAG25454675AGTGAATCGATGATCTCGCCGTTGTCCACGATCTCCACTTGCGCCGCCAT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:44597958-44597977
GATGAGTAGTCTCCGGAGGTGTGAGGGGAG44597958AGTGAATCGATGATCTCGCCGTTGTCCACGATCTCCACTTGCGCCGCCAT
Brassica rapa genome, scaffold: A07.
LR031574.1:24368031-24368050
GATGAGTAGTCTCCGGAGGTGTGGGGGGAG24368031AGTGAATCGATGATCTCGCCGTTGTCCACGATCTCCACTTGCGCCGCCAT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:24706274-24706293
GATGAGTAGTCTCCGGAGGTGTGGGGGGAG24706274AGTGAATCGATGATCTCGCCGTTGTCCACGATCTCCACTTGCGCCGCCAT
Brassica nigra genome assembly, chromosome: 5.
OZ173175.1:25636271-25636290
GTTGAGTACTCTCCGGAGGTGTGGTGGGAG25636271AGTGAATCGATGATCTCGCCGTTGTCCACGGTCTCGACTTGCTCCGCCGC
BN18DYSC_UP_095_H04_07MAR2008_018 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG561297.1:97-116
ATGGCGGCGCAAGTGGAGATCGTGGACAAC97GGCGAGATCATCGATTCACTCTCCCACCACGCCTCCGGAGACTACTCATC
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:3930065-3930084
ATGGCGGCGCAAGTGGAGATCGTGGACAAC3930065GGCGAGATCATCGATTCACTCTCCCACCACGCCTCCGGAGACTACTCATC
Brassica nigra clone CGN06634-B3 microsatellite sequence.
DQ327820.1:193-212
GCGGCGGAGCAAGTCGAGACTGTGGACAAC193GGCGAGATCATCGATTCACT
Brassica nigra clone CGN06634-B1 microsatellite sequence.
DQ327821.1:189-208
GCGGCGGAGCAAGTCGAGACCGTGGACAAC189GGCGAGATCATCGATTCACT
Brassica carinata clone CGN03950-B2 microsatellite sequence.
DQ327822.1:191-210
GCGGCGGAGCAAGTCGAGACCGTGGACAAC191GGCGAGATCATCGATTCACT
Brassica juncea clone 4594-B2 microsatellite sequence.
DQ327823.1:191-210
GCGGCGGAGCAAGTCGAGACCGTGGACAAC191GGCGAGATCATCGATTCACT
Brassica juncea clone CGN07154-B1 microsatellite sequence.
DQ327824.1:189-208
GCGGCGGAGCAAGTCGAGACCGTGGACAAC189GGCGAGATCATCGATTCACT
Brassica carinata clone CGN03950-B1 microsatellite sequence.
DQ327825.1:189-208
GCGGCGGAGCAAGTCGAGACCGTGGACAAC189GGCGAGATCATCGATTCACT
Brassica rapa clone Pachuca-A3 microsatellite sequence.
DQ327826.1:157-176
ATGGCGGCGCAAGTGGAGATCGTGGACAAC157GGCGAGATCATCGATTCACT
Brassica rapa clone Pachuca-A2 microsatellite sequence.
DQ327827.1:153-172
ATGGCGGCGCAAGTGGAGATCGTGGACAAC153GGCGAGATCATCGATTCACT
Brassica rapa clone Pachuca-A1 microsatellite sequence.
DQ327828.1:149-168
ATGGCGGCGCAAGTGGAGATCGTGGACAAC149GGCGAGATCATCGATTCACT
Brassica juncea clone CGN07154-A2 microsatellite sequence.
DQ327829.1:153-172
ATGGCGGCGCAAGTGGAGATCGTGGACAAC153GGCGAGATCATCGATTCACT
Brassica napus clone Vikros-A2 microsatellite sequence.
DQ327830.1:153-172
ATGGCGGCGCAAGTGGAGATCGTGGACAAC153GGCGAGATCATCGATTCACT
Brassica oleracea var. capitata clone Ruhm von Enkhuiser-C microsatellite sequence.
DQ327831.1:141-160
ATGGCGGCGCAAGTGGAGATCGTGGACAAC141GGCGAGATCATCGATTCACT
Brassica napus clone Vikros-C microsatellite sequence.
DQ327832.1:141-160
ATGGCGGCGCAAGTGGAGATCGTGGACAAC141GGCGAGATCATCGATTCACT
Brassica carinata clone CGN03950-C microsatellite sequence.
DQ327833.1:141-160
ATGGCGGCGCAAGTGGAGATCGTGGACAAC141GGCGAGATCATCGATTCACT
Brassica nigra SCAR marker GenBM3-1.152 genomic sequence.
DQ465979.1:133-152
GCGGCGGAGCAAGTCGAGACCGTGGACAAC133GGCGAGATCATCGATTCACT
Brassica juncea SCAR marker GenBM3-1.152 genomic sequence.
DQ465980.1:133-152
GCGGCGGAGCAAGTCGAGACCGTGGACAAC133GGCGAGATCATCGATTCACT
Brassica carinata SCAR marker GenBM3-1.152 genomic sequence.
DQ465981.1:133-152
GCGGCGGAGCAAGTCGAGACCGTGGACAAC133GGCGAGATCATCGATTCACT
Brassica juncea SCAR marker GenBM3-1.154 genomic sequence.
DQ465982.1:135-154
GCGGCGGAGCAAGTCGAGACCGTGGACAAC135GGCGAGATCATCGATTCACT
Brassica carinata SCAR marker GenBM3-1.154 genomic sequence.
DQ465983.1:135-154
GCGGCGGAGCAAGTCGAGACCGTGGACAAC135GGCGAGATCATCGATTCACT
Brassica nigra SCAR marker GenBM3-1.156 genomic sequence.
DQ465984.1:137-156
GCGGCGGAGCAAGTCGAGACTGTGGACAAC137GGCGAGATCATCGATTCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTGAATCGATGATCTCGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTGAATCGATGATCTCGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.191 | 0.182 | search_plus_done; http://172.18.8.135:50800/match?q=AGTGAATCGATGATCTCGCC&k=0&no_gap=0&offset=0&limit=50
0.361 | 0.170 | search_minus_done; http://172.18.8.135:50800/match?q=GGCGAGATCATCGATTCACT&k=0&no_gap=0&offset=0&limit=42
0.376 | 0.015 | cgi_end;

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