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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:09:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mycobacterium sp. ELW1 chromosome, complete genome.
CP032155.1:1772493-1772510
TTACTCGTCGAATGGACCGCGATAGCAATA1772493AGTGCGGTCGAGAAGACGACGCCGACCATCACTGGGACCAGTACGAAC
Nanchangia anserum strain C64 chromosome, complete genome.
CP060506.1:1864980-1864997
GCTCGGACCTCGGGGTCCTCGGGCAGGGGC1864980AGTGCGGTCGAGAAGACGCCGTAGAGGGCGAAGTTGTCGCGACCGTTG
Gordonia sp. L191 chromosome, complete genome.
CP125996.1:3708816-3708833
GGGCGATAGCCTGCCGACGGCAGCCATCCC3708816AGTGCGGTCGAGAAGACGGCGATGAGCAGGATGCCCATCCAGAAGTCG
Eugnorisma glareosa genome assembly, chromosome: 13.
OX387970.1:21613658-21613675
TCGCTAGCAACCAAATCAATTCAACCTATT21613658AGTGCGGTCGAGAAGACGAGCGTAATATGTAACAAGTAGATGAAAAAC
C08_100422ZM14_CO8-5F.ab1 Zostera marina cDNA library of leaf treated by salt stress Zostera marina cDNA, mRNA sequence.
HS090888.1:141-158
TGCCGGTTAAACTCAGGTTTCGAGACTCAC141CGTCTTCTCGACCGCACTCCTTTTCCGTTCATTTCCAGGCAATAGACG
TSA: Musa acuminata AAA Group Unigene8334_B1 mRNA sequence.
JV351652.1:1551-1568
TTCCTCCCGAGCCTCCTCCTCCTCCGATGT1551CGTCTTCTCGACCGCACTCGCCACGGATCGCGTCGCAAATCGTCCCTT
TSA: Musa acuminata AAA Group Unigene19218_NK1 mRNA sequence.
JV415770.1:1747-1764
TTCCTCCCGAGCCTCCTCCTCCTCCGATGT1747CGTCTTCTCGACCGCACTCGCCACGGATCGCGTCGCAAATCGTCCCTT
Musa acuminata subsp. malaccensis isolate AA chromosome 7.
CP126376.1:34068210-34068227
CTCCCGAGCCTCCTCCTCCTCCTCCGATGT34068210CGTCTTCTCGACCGCACTCGCCACGGATCGCGTCGCAAATCGCCCCTT
Musa acuminata subsp. malaccensis isolate AA chromosome 7.
CP126376.1:34068342-34068359
GACATTAATGGCCCCCTCCTCCTCCGATGT34068342CGTCTTCTCGACCGCACTCGCCACGGATCGCGTCGCAAATCACCCCTT
Musa acuminata subsp. malaccensis isolate AA chromosome 7.
CP126376.1:34068444-34068461
GCTGACATTAATGGCCTCCTCCTCCGATGT34068444CGTCTTCTCGACCGCACTCGCCACGGATCCCGGTCCCAAATCGCCACG
Musa acuminata subsp. malaccensis isolate AA chromosome 18.
CP126387.1:33897662-33897679
CTCCCGAGCCTCCTCCTCCTCCTCCGATGT33897662CGTCTTCTCGACCGCACTCGCCACGGATCGCGTCGCAAATCGCCCCTT
Musa acuminata subsp. malaccensis isolate AA chromosome 18.
CP126387.1:33897794-33897811
GACATTAATGGCCCCCTCCTCCTCCGATGT33897794CGTCTTCTCGACCGCACTCGCCACGGATCGCGTCGCAAATCACCCCTT
Musa acuminata subsp. malaccensis isolate AA chromosome 18.
CP126387.1:33897896-33897913
GCTGACATTAATGGCCTCCTCCTCCGATGT33897896CGTCTTCTCGACCGCACTCGCCACGGATCCCGGTCCCAAATCGCCACG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A07.
HG996473.1:34992463-34992480
CCGAGCCTCCTCCTCCTCCTCCTCCGATGT34992463CGTCTTCTCGACCGCACTCGCCACGGATCGCGTCGCAAATCGCCCCTT
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A07.
HG996473.1:34992595-34992612
GACATTAATGGCCCCCTCCTCCTCCGATGT34992595CGTCTTCTCGACCGCACTCGCCACGGATCGCGTCGCAAATCACCCCTT
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A07.
HG996473.1:34992697-34992714
GCTGACATTAATGGCCTCCTCCTCCGATGT34992697CGTCTTCTCGACCGCACTCGCCACGGATCGCGTCGCAAATCGCCCCTT
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:38698572-38698589
CTCCCGAGCCTCCTCCTCCTCCTCCGATGT38698572CGTCTTCTCGACCGCACTCGCCACGGATGGCGTCGCAAATCGCCCCTT
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:38698704-38698721
GACATTAACGGCCCCCTCCTCCTCCGATGT38698704CGTCTTCTCGACCGCACTCGCCACGGATCGCGTCGCAAATCACCCCTT
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:38698806-38698823
GCTGACATTAATGGCCTCCTCCTCCGATGT38698806CGTCTTCTCGACCGCACTCGCCACGGATCCGCGTCGCAAATCGCCCCT
Climacium dendroides genome assembly, chromosome: 2.
OX467083.1:8644992-8645009
TTCTCATTCCCACACAATCCTCGGCCTGCA8644992CGTCTTCTCGACCGCACTCGGCGATGCTTAAACCGTAAGCTACGCACA
Gordonia polyisoprenivorans strain R9 chromosome, complete genome.
CP072203.1:2189576-2189593
CGACTTCTGGATGGGCATCCTGCTCATCGC2189576CGTCTTCTCGACCGCACTGGGATGGCTGCCGTCGGCAGGCTATCGCCC
Neoneuromus ignobilis isolate Gutianshan chromosome 5.
CP092091.1:29201325-29201342
CGCGTTAACCGTACACACAACCGCCGCCGC29201325CGTCTTCTCGACCGCACTTTTCACTTTCGCCAAATTGCGTTCGAGGGT
Apamea monoglypha genome assembly, chromosome: 6.
OU426920.1:5941569-5941586
TTTGAAGAAAATTTATGTGTCTGGAAAATT5941569CGTCTTCTCGACCGCACTATAATATTTGACTAATAGTCAGCTTATAAT
Eulithis prunata genome assembly, chromosome: 15.
OU974021.1:2005783-2005800
GGTTACCTGGGGTCCCAGTTAGCAGCTAAT2005783CGTCTTCTCGACCGCACTCTCAGTCGCAAACGAACTTGTCTTGTCGAC
Melanargia galathea genome assembly, chromosome: 19.
OV049874.1:6515487-6515504
ACGGGCCGTTTTATTATAAAAGAAACGGCC6515487CGTCTTCTCGACCGCACTAAGCCCTATTCAGCATAGTCTGATGTGTGA
Eulithis testata genome assembly, chromosome: 17.
OX382210.1:2388645-2388662
GGTTACCTGGGGTCCCAGTTAGCAGCTAAT2388645CGTCTTCTCGACCGCACTCTGAGTCTCAAACGAACTTGTCTTGTCGAC
Schizotus pectinicornis genome assembly, chromosome: 8.
OX638210.1:6874634-6874651
CTTGTAAGCTTCCGGACTTTTCCACGTGAT6874634CGTCTTCTCGACCGCACTCAACCTCGTCTCCTTCAAAACGATACTTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGTGCGGTCGAGAAGACG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTGCGGTCGAGAAGACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.161 | 0.152 | search_plus_done; http://172.18.8.135:50400/match?q=AGTGCGGTCGAGAAGACG&k=0&no_gap=0&offset=0&limit=50
0.423 | 0.262 | search_minus_done; http://172.18.8.135:50400/match?q=CGTCTTCTCGACCGCACT&k=0&no_gap=0&offset=0&limit=46
0.437 | 0.015 | cgi_end;

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