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2025-04-06 11:59:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 17960 from patent US 7750207.
GX323885.1:392-411

GACGAACCGGCCAAGGAAGAGGGAGAGACC392AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

EL2754F Brassica embryo library (EL) Brassica napus cDNA clone EL2754 3', mRNA sequence.
CN828212.1:332-351

GACGAACCGGCCAAGGAAGAGGGAGAGACC332AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

EX2PLCL3_UP_045_E04_02NOV2004_024 Brassica napus EX2PLCL3 Brassica napus cDNA 5', mRNA sequence.
EE504346.1:292-311

GACGAACCGACCAAGGAAGAGGGAGAGACC292AGTGCTGAGGCTTATAACGAC

OL1321F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1321, mRNA sequence.
EH414395.1:326-345

GACGAACCGGCCAAGGAAGAGGGAGAGACC326AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL2423F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2423, mRNA sequence.
EH416596.1:302-321

GACGAACCGGCCAAGGAAGAGGGAGAGACC302AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL283F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL283, mRNA sequence.
EH417441.1:316-335

GACGAACCGGCCAAGGAAGAGGGAGAGACC316AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL3385F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3385, mRNA sequence.
EH418537.1:310-329

GACGAACCGGCCAAGGAAGAGGGAGAGACC310AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL347F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL347, mRNA sequence.
EH418714.1:324-343

GACGAACCGGCCAAGGAAGAGGGAGAGACC324AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL5077F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5077, mRNA sequence.
EH421650.1:388-407

GACGAACCGGCCAAGGAAGAGGGAGAGACC388AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL5280F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5280, mRNA sequence.
EH422006.1:315-334

GACGAACCGGCCAAGGAAGAGGGAGAGACC315AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL6698F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6698, mRNA sequence.
EH424785.1:343-362

GACGAACCGGCCAAGGAAGAGGGAGAGACC343AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL6962F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6962, mRNA sequence.
EH425295.1:271-290

GACGAACCGGCCAAGGAAGAGGGAGAGACC271AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL7510F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7510, mRNA sequence.
EH426216.1:543-562

GACGAACCGGCCAAGGAAGAGGGAGAGACC543AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL7571F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7571, mRNA sequence.
EH426336.1:317-336

GACGAACCGGCCAAGGAAGAGGGAGAGACC317AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL7623F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7623, mRNA sequence.
EH426424.1:327-346

GACGAACCGGCCAAGGAAGAGGGAGAGACC327AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL7631F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7631, mRNA sequence.
EH426434.1:327-346

GACGAACCGGCCAAGGAAGAGGGAGAGACC327AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL8644F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8644, mRNA sequence.
EH428476.1:293-312

GACGAACCGGCCAAGGAAGAGGGAGAGACC293AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL8847F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8847, mRNA sequence.
EH428878.1:304-323

GACGAACCGGCCAAGGAAGAGGGAGAGACC304AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL8849F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8849, mRNA sequence.
EH428882.1:326-345

GACGAACCGGCCAAGGAAGAGGGAGAGACC326AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL8876F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8876, mRNA sequence.
EH428925.1:273-292

GACGAACCGGCCAAGGAAGAGGGAGAGACC273AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

OL9632F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9632, mRNA sequence.
EH430426.1:354-373

GACGAACCGGCCAAGGAAGAGGGAGAGACC354AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0198514 Brassica napus Stem library Brassica napus cDNA, mRNA sequence.
EV129006.1:313-332

GACGAACCGGCCAAGGAAGAGGGAGAGACC313AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0203413 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV137487.1:344-363

GACGAACCGGCCAAGGAAGAGGGAGAGACC344AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0203903 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV137977.1:345-364

GACGAACCGGCCAAGGAAGAGGGAGAGACC345AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0152135 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV171443.1:483-502

GACGAACCGGCCAAGGAAGAGGGAGAGACC483AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0152544 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV180755.1:321-340

GACGAACCGACCAAGGAAGAGGGAGAGACC321AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0101688 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV200535.1:397-416

GACGAACCGGCCAAGGAAGAGGGAGAGACC397AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0102298 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV201145.1:377-396

GACGAACCGGCCAAGGAAGAGGGAGAGACC377AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0171289 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV204108.1:507-526

GACGAACCGACCAAGGAAGAGGGAGAGACC507AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0179909 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV209566.1:522-541

GACGAACCGACCAAGGAAGAGGGAGAGACC522AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0185236 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV213415.1:456-475

GACGAACCGGCCAAGGAAGAGGGAGAGACC456AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0188488 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV215573.1:452-471

GACGAACCGGCCAAGGAAGAGGGAGAGACC452AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

0188846 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV215735.1:449-468

GACGAACCGGCCAAGGAAGAGGGAGAGACC449AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

RR3BC05JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV546934.1:425-444

GACGAACCGGCCAAGGAAGAGGGAGAGACC425AGTGCTGAGGCTTATAACGACGGATGGACTGAGCTCGGCTCTCACCAAAG

RR3BC16JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV546943.1:425-444

GACGAACCGGCCAAGGAAGAGGGAGAGACC425AGTGCTGAGGCTTATAACGACGGATGGACTGAGCTCGGCTCTCACCAAAG

BR067145 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-077B03 5', mRNA sequence.
EX082501.1:361-380

GACGAACCGACCAAGGAAGAGGGAGAGACC361AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

RR2BQ23JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX758831.1:440-459

GACGAACCGGCCAAGGAAGAGGGAGAGACC440AGTGCTGAGGCTTATAACGACGGATGGACTGAGCTCGGCTCTCACCAAAG

RR2BU44JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX759112.1:398-417

GACGAACCGGCCAAGGAAGAGGGAGAGACC398AGTGCTGAGGCTTATAACGACGGATGGACTGAGCTCGGCTCTCACCAAAG

RR2CF87JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX760473.1:444-463

GACGAACCGGCCAAGGAAGAGGGAGAGACC444AGTGCTGAGGCTTATAACGACGGATGGACTGAGCTCGGCTCTCACCAAAG

RS3DU62JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY944463.1:439-458

GACGAACCGGCCAAGGAAGAGGGATAGACC439AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

1106514774259 Cryptosporidium muris (strain RN66) cDNA library, stage oocyst Cryptosporidium muris RN66 cDNA clone 1061039178421, mRNA sequence.
FD409958.1:354-373

GACGAACCGGCCAAGGAAGAGGGAGAGACC354AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

RR2FI67JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD539106.1:396-415

GACGAACCGGCCAAGGAAGAGGGAGAGACC396AGTGCTGAGGCTTATAACGACGGATGGACTGAGCTCGGCTCTCACCAAAG

RR4F221JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD553931.1:378-397

GACGAACCGGCCAAGGAAGAGGGAGAGACC378AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

RS2G340JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD576165.1:418-437

GACGAACCGGCCAAGGAAGAGGGATAGACC418AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

RR2G758JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD967097.1:405-424

AACGAACCGGCCAAGGAAGAGGGAGAGACC405AGTGCTGAGGCTTATAACGACGGATGGACTGAGCTCGGCTCTCACCAAAG

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF04G14, 3'-end sequence.
FY069574.1:290-309

GACGAACCGACCAAGGAAGAGGGAGAGACC290AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF07K06, 3'-end sequence.
FY070692.1:312-331

GACGAACCGACCAAGGAAGAGGGAGAGACC312AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF07P15, 3'-end sequence.
FY070808.1:356-375

GACGAACCGACCAAGGAAGAGGGAGAGACC356AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF13F18, 3'-end sequence.
FY072727.1:301-320

GACGAACCGACCAAGGAAGAGGGAGAGACC301AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

Brassica rapa subsp. pekinensis mRNA, clone: BBRAF31L20, 3'-end sequence.
FY423407.1:289-308

GACGAACCGACCAAGGAAGAGGGAGAGACC289AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

SSH_Wh47 Triticum aestivum BH1146 young leaves Triticum aestivum cDNA, mRNA sequence.
GH268552.1:380-399

CGAACCGCACCAAGGAATCAGGGAGAGACC380AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

TSA: Raphanus sativus var. sativus RNA, contig: WG3_359.
FX675051.1:356-375

GACGAACCGGCCGAGGAAGAGGGAGAGACC356AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_735.
FX716102.1:363-382

GACGAACCGACCAAGGAAGAGGGAGAGACC363AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_138.
FX760728.1:421-440

GACGAACCGACCAAGGAAGAGGGAGAGACC421AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_4199.
FX767337.1:346-365

GACGAACCGGCCGAGGAAGAGGGAGAGACC346AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189531.2:68954-68973

GACGAACCGACCAAGGAAGAGGGAGAGACC68954AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:26910523-26910542

GACGAACCGGCCAAGGAAGAGGGAGAGACC26910523AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

Brassica napus genome assembly, chromosome: C06.
HG994370.1:20603968-20603987

GACGAACCGGCCAAGGAAGAGGGAGAGACC20603968AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:17591591-17591610

GACGAACCGGCCAAGGAAGAGGGAGAGACC17591591AGTGCTGAGGCTTATAACGACGGATGGGCTGAGCTCGGCTCTCACGACGG

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Debug Info:

0.009 | 0.009 | search_start;
2.889 | 2.880 | search_plus_done; http://172.18.8.135:50400/match?q=AGTGCTGAGGCTTATAACGA&k=0&no_gap=0&offset=0&limit=50
2.960 | 0.071 | search_minus_done; http://172.18.8.135:50400/match?q=TCGTTATAAGCCTCAGCACT&k=0&no_gap=0&offset=0&limit=0
2.960 | 0.000 | cgi_end;

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