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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 05:05:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KR 1020140062712-A/26: A method for identifying hot pepper varieties using microsatellites markers.
DI378158.1:1-20
1AGTGGGTTCACTGACTTGGG
TSA: Capsicum annuum MGMT_Contig1178, mRNA sequence.
JW051422.1:1455-1474
TCCCAAATTAACGCAAGACTCAGCAGTGGG1455AGTGGGTTCACTGACTTGGGGCGATGAAGCTGATGATGATGATGATGAAG
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:39375630-39375649
TCCCAAATTAACGCAAGACTCAGCAGTGGG39375630AGTGGGTTCACTGACTTGGGGCGATGAAGCTGATGATGATGATGATGATG
Microvenator marinus strain V1718 chromosome, complete genome.
CP042467.1:4793646-4793665
GCAGATGGTAAGAGGAGCTGCGTGTGCCCA4793646AGTGGGTTCACTGACTTGGGAGACGAATGCGCGTGTTTCGGCACCGTCGA
Sphinx pinastri genome assembly, chromosome: 20.
OX387634.1:3360318-3360337
TCTTCTAATTATGGCCACGGCCGGAGCTGG3360318AGTGGGTTCACTGACTTGGGTCGAGTACAATTTTGAAATAAACGTTTTTA
EST323979 L. hirsutum trichome, Cornell University Solanum habrochaites cDNA clone cLHT23H2 5', mRNA sequence.
AW617568.1:183-202
CTTCGCCCCCTCCGCCATCATCGCCGTCGC183CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
EST427685 potato leaves and petioles Solanum tuberosum cDNA clone cSTB27J8 5' sequence, mRNA sequence.
BE923916.1:105-124
CTTCGCCTCCTCCGCCATCATCGTCGTCCC105CCCAAGTCAGTGAACCCACTCCCACTGCTAAGTCCTGCGTCAATGCCGGC
EST546163 tomato flower, buds 0-3 mm Solanum lycopersicum cDNA clone cTOA29O7 5' end, mRNA sequence.
BI926274.1:182-201
CTTCGCCCCCTCCGCCATCATCGTCGTCGC182CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
KS01002F07 KS01 Capsicum annuum cDNA, mRNA sequence.
BM059622.1:75-94
CATCATCATCATCATCATCAGCTTCATCGC75CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCTTGCGTTAATTTGGGA
Solanum lycopersicum cDNA, clone: LA24AH06, 5' end, expressed in leaf.
BP900878.1:79-98
CTTCGCCCCCTCCGCCATCATCGTCGTCGC79CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum lycopersicum cDNA, clone: LC12DF01, 5' end, expressed in leaf.
BP908651.1:175-194
CTTCGCCCCCTCCGCCATCATCGTCGTCGC175CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
EST724883 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAE832 5' end, mRNA sequence.
CK278805.1:189-208
CTTCGCCTCCTCCGCCATCATCGTCGTCCC189CCCAAGTCAGTGAACCCACTCCCACTGCTAAGTCCTGCGTCAATGCCGGC
Solanum lycopersicum cDNA, clone: LEFL1030BF07, 5' end, expressed in leaf.
DB687590.1:226-245
CTTCGCCCCCTCCGCCATCATCGTCGTCGC226CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCCATGCCGGC
Solanum lycopersicum cDNA, clone: LEFL1051AB11, 5' end, expressed in leaf.
DB694327.1:172-191
CTTCGCCCCCTCCGCCATCATCGTCGTCGC172CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum lycopersicum cDNA, clone: LEFL1074AE10, 5' end, expressed in leaf.
DB701588.1:172-191
CTTCGCCCCCTCCGCCATCATCGTCGTCGC172CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum lycopersicum cDNA, clone: LEFL1079DA11, 5' end, expressed in leaf.
DB703486.1:156-175
CTTCGCCCCCTCCGCCATCATCGTCGTCGC156CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum lycopersicum cDNA, clone: LEFL1080BD10, 5' end, expressed in leaf.
DB703702.1:224-243
CTTCGCCCCCTCCGCCATCATCGTCGTCGC224CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum lycopersicum cDNA, clone: LEFL1088CA01, 5' end, expressed in leaf.
DB705381.1:189-208
CTTCGCCCCCTCCGCCATCATCGTCGTCGC189CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum melongena mRNA, clone: SmFL13F20, 5'end.
FS075175.1:227-246
CTTCTACTCCGCCATCATCATCATCGTCGC227CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCTTGCGTCAATGCGGGC
Solanum melongena mRNA, clone: SmFL14J07, 5'end.
FS076047.1:195-214
CTTCTACTCCGCCATCATCATCATCGTCGC195CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCTTGCGTCAATGCGGGC
Solanum melongena mRNA, clone: SmFL18B20, 5'end.
FS078518.1:208-227
CTTCTACTCCGCCATCATCATCATCGTCGC208CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCTTGCGTCAATGCGGGC
Solanum melongena mRNA, clone: SmFL27E11, 5'end.
FS084715.1:197-216
CTTCTACTCCGCCATCATCATCATCGTCGC197CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCTTGCGTCAATGCGGGC
Solanum melongena mRNA, clone: SmFL34L22, 5'end.
FS089975.1:197-216
CTTCTACTCCGCCATCATCATCATCGTCGC197CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCTTGCGTCAATGCGGGC
Solanum melongena mRNA, clone: SmFL35I20, 5'end.
FS090536.1:197-216
CTTCTACTCCGCCATCATCATCATCGTCGC197CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCTTGCGTCAATGCGGGC
Solanum melongena mRNA, clone: SmFL38F01, 5'end.
FS092500.1:195-214
CTTCTACTCCGCCATCATCATCATCGTCGC195CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCTTGCGTCAATGCGGGC
Solanum lycopersicum cDNA, clone: LEFL1080BD10, HTC in leaf.
AK324634.1:224-243
CTTCGCCCCCTCCGCCATCATCGTCGTCGC224CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum lycopersicum Micro-Tom DNA, chromosome 9, draft genome sequence.
AP028943.1:64001461-64001480
CTTCGCCCCCTCCGCCATCATCGTCGTCGC64001461CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum lycopersicum cultivar I-3 chromosome 9.
CP023765.1:66693471-66693490
CTTCGCCCCCTCCGCCATCATCGTCGTCGC66693471CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:252735209-252735228
CTTCATCATCATCATCATCAGCTTCATCGC252735209CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCTTGCGTTAATTTGGGA
Solanum verrucosum cultivar 11H23 chromosome 9.
CP133620.1:51518255-51518274
CTTCGCCCCCTCCGCCATCATCGTCGTCGC51518255CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGCGTCAATGCCGGC
Solanum lycopersicum chromosome 9 clone C09HBa0099P03, complete sequence.
EF647601.1:60297-60316
CTTCGCCCCCTCCGCCATCATCGTCGTCGC60297CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum pennellii chromosome ch09, complete genome.
HG975448.1:78086307-78086326
CTTCGCCCCCTCCGCCATCATCGCCGTCTC78086307CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum lycopersicum chromosome ch09, complete genome.
HG975521.1:62190681-62190700
CTTCGCCCCCTCCGCCATCATCGTCGTCGC62190681CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum lycopersicum genome assembly, chromosome: 9.
OU640352.1:77345960-77345979
CTTCGCCCCCTCCGCCATCATCGTCGTCGC77345960CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGC
Solanum dulcamara genome assembly, chromosome: 3.
OX359254.1:74706740-74706759
CTTCTACTACTCCGCCATCATCGTCGTCGC74706740CCCAAGTCAGTGAACCCACTCCCAATGCTGAGTCTTGCGTCAATGCGGGC
Antheraea yamamai NBRP DNA, chromosome 29, sequence.
AP028452.1:1620986-1621005
CGAACAGAGAAGATAGAGTTAACATGCAAC1620986CCCAAGTCAGTGAACCCACTTCGGTAAACTGGACTATAGTCCGCGTCAAA
Volucella inflata genome assembly, chromosome: 1.
OV743716.1:96734245-96734264
AATATTTTTCAGAAACCTTTAGAGGGGGTC96734245CCCAAGTCAGTGAACCCACTCTCATTCAGGAAGTGAATGAAACCATTCAA

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