GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 19:29:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:10694017-10694036
GAGATTCTAGTAGATAGAGATTGTCTAGAG10694017AGTTAACCTTGAGTGAGCCAATATTTAAAGATGATCTTGTTACTATGTTA
Felis catus Senzu DNA, chromosome: A2, American Shorthair breed.
AP023153.1:44424017-44424036
CCTACATTACAGGTTAGAAAATTGAGGTGT44424017TGGCTCACTCAAGGTTAACTGCATATTTATTGAATGAGAATTACATCTTT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 134 unordered pieces.
FJ789657.1:431215-431234
TAACATAGTAACAAGATCATCTTTAAATAT431215TGGCTCACTCAAGGTTAACTCTCTAGACAATCTCTATCTACTAGAATCTC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:18943392-18943411
TAACATAGTAACAAGATCATCTTTAAATAT18943392TGGCTCACTCAAGGTTAACTCTCTAGACAATCTCTATCTACTAGAATCTC
Brassica rapa genome, scaffold: A07.
LR031574.1:17827807-17827826
CTAACATAGTAACAAGATCATCTTTAAATA17827807TGGCTCACTCAAGGTTAACTCTCTAGACAATCTCTATCTACTAGAATCTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:18119488-18119507
CTAACATAGTAACAAGATCATCTTTAAATA18119488TGGCTCACTCAAGGTTAACTCTCTAGACAATCTCTATCTACTAGAATCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTTAACCTTGAGTGAGCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTTAACCTTGAGTGAGCCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=AGTTAACCTTGAGTGAGCCA&k=0&no_gap=0&offset=0&limit=50
0.142 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCTCACTCAAGGTTAACT&k=0&no_gap=0&offset=0&limit=49
0.145 | 0.003 | cgi_end;

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