GGGenome | Results

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2025-04-09 14:44:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

QGF26M16.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGF26M16, mRNA sequence.
BQ992818.1:513-532

TGTATAACTTATTATATTGCATCATGTATA513AGTTAATGGTGGCCTTTCCCGAANNCCACNCNAACC

Luidia sarsii genome assembly, chromosome: 8.
OX465108.1:4293096-4293115

CACAATGTCTGGATACATTGCGCGCGTTTA4293096AGTTAATGGTGGCCTTTCCCATCCTGGAAAAAAAATACACTCAACCTGGG

Pseudopediastrum boryanum genome assembly, chromosome: 3.
OY744495.1:6575553-6575572

TCCATTTAACATGTAGGTGGTTTCACGCAT6575553GGGAAAGGCCACCATTAACTTTGCAGCTTCAACGATTAAGCTGGAGCTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.127 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=AGTTAATGGTGGCCTTTCCC&k=0&no_gap=0&offset=0&limit=50
0.151 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=GGGAAAGGCCACCATTAACT&k=0&no_gap=0&offset=0&limit=48
0.152 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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