GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:31:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:3819642-3819663
ACAGGCCTGCATTTGTTTTCATTTAAACCT3819642AGTTACACAGAGGAATCTTGTCTAATTTTTTTTTAAAATAATAATTAATTAT
Peromyscus eremicus genome assembly, chromosome: 4.
OX460397.1:122058968-122058989
AAGGTTTATCTTTTTTTTTTCTTTTTTTGA122058968GACAAGATTCCTCTGTGTAACTTTGAAGCCTGTCCTGAAACTCACTCTGTAG
Peromyscus eremicus genome assembly, chromosome: 4.
OX460469.1:123926349-123926370
AAAGGTTTATCTTTTTTTTTCTTTTTTTGA123926349GACAAGATTCCTCTGTGTAACTTTGAAGCCTGTCCTGAAACTCACTCTGTAG
Rattus norvegicus clone CH230-4J18, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC096926.8:175270-175291
TATGAAGCCAGATTTGTTTTGTTTTTTTGA175270GACAAGATTCCTCTGTGTAACTTTGGCTGCCCTGGAAGCTCTGTAGACCAGG
Brassica napus genome assembly, chromosome: A10.
HG994364.1:16961827-16961848
ATAATTAATTATTATTTTAAAAAAAAATTA16961827GACAAGATTCCTCTGTGTAACTAGGTTTAAATGAAAACAAATGCAGGCCTGT
Brassica rapa genome, scaffold: A10.
LR031577.1:13888674-13888695
ATAATTAATTATTATTTTAAAAAAAAATTA13888674GACAAGATTCCTCTGTGTAACTAGGTTTAAATGAAAACAAATGCAGGCCTGT
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:16622535-16622556
ATAATTAATTATTATTTTAAAAAAAAATTA16622535GACAAGATTCCTCTGTGTAACTAGGTTTAAATGAAAACAAATGCAGGCCTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTTACACAGAGGAATCTTGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTTACACAGAGGAATCTTGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=AGTTACACAGAGGAATCTTGTC&k=0&no_gap=0&offset=0&limit=50
0.147 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=GACAAGATTCCTCTGTGTAACT&k=0&no_gap=0&offset=0&limit=49
0.151 | 0.004 | cgi_end;

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