GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 07:32:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Borostomias antarcticus genome assembly, chromosome: 3.
OX465206.1:5369953-5369972
ACACACATGCACACACACACAAATTAAATG5369953AGTTCTGAGGCGTTGCATTTTTCAAAACGCCGCAGTACAAATGGTGGACG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2666817-2666836
ATATGATCTTGCTGCTGCGATTAATCTGAC2666817AGTTCTGAGGCGTTGCATTTGAATCAAGACTTTGGTATGTTAGCTGAACT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2739821-2739840
ATATGATCTTGCTGCTGCGATTAATCTGAC2739821AGTTCTGAGGCGTTGCATTTGAATCAAGACTTTGGTATGTTAGCTGAACT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2659689-2659708
ATATGATCTTGCTGCTGCGATTAATCTGAC2659689AGTTCTGAGGCGTTGCATTTGAATCAAGACTTTGGTATGTTAGCTGAACT
Malus domestica Starking Delicious DNA, BAC clone SD-178_L15, complete sequence.
LC360748.1:922-941
ATATGATCTTGCTGCTGCGATTAATCTGAC922AGTTCTGAGGCGTTGCATTTGAATCAAGACTTTGGTATGTTAGCTGAACT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2769311-2769330
ATATGATCTTGCTGCTGCGATTAATCTGAC2769311AGTTCTGAGGCGTTGCATTTGAATCAAGACTTTGGTATGTTAGCTGAACT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2757958-2757977
ATATGATCTTGCTGCTGCGATTAATCTGAC2757958AGTTCTGAGGCGTTGCATTTGAATCAAGACTTTGGTATGTTAGCTGAACT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2832653-2832672
ATATGATCTTGCTGCTGCGATTAATCTGAC2832653AGTTCTGAGGCGTTGCATTTGAATCAAGACTTTGGTATGTTAGCTGAACT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2872610-2872629
ATATGATCTTGCTGCTGCGATTAATCTGAC2872610AGTTCTGAGGCGTTGCATTTGAATCAAGACTTTGGTATGTTAGCTGAACT
Erannis defoliaria genome assembly, chromosome: 11.
FR990077.1:4756988-4757007
ATTTCTTGAAGGAGTCAGCTCTCTATTAGC4756988AGTTCTGAGGCGTTGCATTTCAATACATCTTTCAGAGTAAGTCTTCAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGTTCTGAGGCGTTGCATTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTTCTGAGGCGTTGCATTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.108 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=AGTTCTGAGGCGTTGCATTT&k=0&no_gap=0&offset=0&limit=50
0.126 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=AAATGCAACGCCTCAGAACT&k=0&no_gap=0&offset=0&limit=40
0.126 | 0.000 | cgi_end;

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