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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 19:19:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

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Results:

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Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a006G19_SP6.
AM058016.1:53-74
TCCAGCCATCGGAACTCAAGATCGCGTCGG53AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
BNDH5DCT_UP_007_B01_16DEC2003_013 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
CN727187.1:94-115
TCCAGCCATCGGAACTCAAGATCGCGTCGG94AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
16ACDHDS_UP_001_A10_13APR2004_080 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
CX279687.1:72-93
TCCAGCCATCGGAACTCAAGATCGCGTCGG72AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
Brassica oleracea var. viridis mRNA, clone: KALE-078J18, 5' end sequence.
DK485602.1:85-106
TCCAGCCATCGGAACTCAAGATCGCGTCGG85AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
Brassica oleracea var. viridis mRNA, clone: KALE-126K08, 5' end sequence.
DK503982.1:85-106
TCCAGCCATCGGAACTCAAGATCGCGTCGG85AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
56ACAC48_UP_030_E09_20DEC2004_071 Brassica napus Brassica napus cDNA 5', mRNA sequence.
EE414439.1:89-110
TCCAGCCATCGGAACTCAAGATCGCGTCGG89AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
37RDBRH_UP_031_F03_05JUL2004_021 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE524646.1:77-98
TCCAGCCATCGGAACTCAAGATCGCGTCGG77AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
61RDBNCM_UP_037_G10_23DEC2004_068 Brassica napus 61RDBNCM Brassica napus cDNA 5', mRNA sequence.
EE538980.1:77-98
TCCAGCCATCGGAACTCAAGATCGCGTCGG77AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
40JKME7D_UP_070_B10_16JUNE2006_078 40JKME7D Brassica napus cDNA 5', mRNA sequence.
ES983008.1:36-57
TCCAGCCATCGGAACTCAAGATCGCGTCGG36AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
BNSCS3CT_UP_174_B01_12MAY2007_013 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV050575.1:94-115
TCCAGCCATCGGAACTCAAGATCGCGTCGG94AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
0205701 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV139775.1:215-236
TCCAGCCATCGGAACTCAAGATCGCGTCGG215AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
0206268 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV140342.1:130-151
TCCAGCCATCGGAACTCAAGATCGCGTCGG130AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
0079400 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV155539.1:74-95
TCCAGCCATCGGAACTCAAGATCGCGTCGG74AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
RR3A251TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV547751.1:80-101
TCCAGCCATCGGAACTCAAGAACGCGTCGG80AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
BR044583 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-065F04 5', mRNA sequence.
EX059939.1:12-33
ATGCGCGTCGG12AGTTCTTGACGAATTGCCTTCCTTTCCTGTCTAGAGATCTCTGCAAAGACTG
BR091485 seed and seedling cDNA library KFSD Brassica rapa subsp. pekinensis cDNA clone KFSD-043G03 5', mRNA sequence.
EX105195.1:93-114
TCCAGCCATCGGAACTCAAGATCGCGTCGG93AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
BR091931 seed and seedling cDNA library KFSD Brassica rapa subsp. pekinensis cDNA clone KFSD-051E07 5', mRNA sequence.
EX105641.1:92-113
TCCAGCCATCGGAACTCAAGATCGCGTCGG92AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
RR1CP78TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX749681.1:96-117
TCCAGCCATCGGAACTCAAGATCGCGTCGG96AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
RS2EI44TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY941453.1:85-106
TCCAGCCATCAGAACTCAAGATCGCGTCGG85AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
BN18DYSC_UP_176_F05_4APR2008_037 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG567986.1:98-119
TCCAGCCATCGGAACTCAAGATCGCGTCGG98AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF33D20, 5'-end sequence.
FY418893.1:77-98
TCCAGCCATCGGAACTCAAGATCGCGTCGG77AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
BOGUR22TF BOGU Brassica oleracea genomic clone BOGUR22, genomic survey sequence.
BH568522.1:547-568
TCCAGCCATCGGAACTCAAGATCGCGTCGG547AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
Brassica napus genome assembly, chromosome: A07.
HG994361.1:2216148-2216169
TCCAGCCATCGGAACTCAAGATCGCGTCGG2216148AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:6523368-6523389
TCCAGCCATCGGAACTCAAGATCGCGTCGG6523368AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
Brassica rapa genome, scaffold: A07.
LR031574.1:2186006-2186027
TCCAGCCATCGGAACTCAAGATCGCGTCGG2186006AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:7828044-7828065
TCCAGCCATCGGAACTCAAGATCGCGTCGG7828044AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:23428513-23428534
TCCAGCCATCAGAACTCAAGATCGCGTCGG23428513AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:2196941-2196962
TCCAGCCATCGGAACTCAAGATCGCGTCGG2196941AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:23428513-23428534
TCCAGCCATCAGAACTCAAGATCGCGTCGG23428513AGTTCTTGACGAATTGCCTTCCTTTCTTGTCTAGAGATCTCTGCAAAGACTG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8568.
FX669629.1:1442-1463
CAGTCTTTGCAGAGATCTCTAGACAAGAAA1442GGAAGGCAATTCGTCAAGAACTCCGACGCGATCTTGAGTTCCGATGGCTGGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_16547.
FX698713.1:1435-1456
CAGTCTTTGCAGAGATCTCTAGACAAGAAA1435GGAAGGCAATTCGTCAAGAACTCCGACGCGATCTTGAGTTCCGATGGCTGGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_38721.
FX732247.1:1436-1457
CAGTCTTTGCAGAGATCTCTAGACAAGAAA1436GGAAGGCAATTCGTCAAGAACTCCGACGCGATCTTGAGTT
TSA: Raphanus sativus RS18916 mRNA sequence.
JT803463.1:1460-1481
CAGTCTTTGCAGAGATCTCTAGACAAGAAA1460GGAAGGCAATTCGTCAAGAACTCCGACGCGATCTTGAGTTCTGATGGCTGGA
BOMRF68TF BO_2_3_KB Brassica oleracea genomic clone BOMRF68, genomic survey sequence.
BZ520283.1:679-700
CAGTCTTTGCAGAGATCTCTAGACAAGAAA679GGAAGGCAATTCGTCAAGAACTCCGACGCGATCTTGAGTTCCGATGGCTGGA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:34386413-34386434
CAGTCTTTGCAGAGATCTCTAGACAAGAAA34386413GGAAGGCAATTCGTCAAGAACTCCGACGCGATCTTGAGTTCCGATGGCTGGA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:55181671-55181692
CAGTCTTTGCAGAGATCTCTAGACAAGAAA55181671GGAAGGCAATTCGTCAAGAACTCCGACGCGATCTTGAGTTCCGATGGCTGGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGTTCTTGACGAATTGCCTTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTTCTTGACGAATTGCCTTCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.341 | 1.333 | search_plus_done; http://172.18.8.135:50400/match?q=AGTTCTTGACGAATTGCCTTCC&k=0&no_gap=0&offset=0&limit=50
1.500 | 0.159 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAGGCAATTCGTCAAGAACT&k=0&no_gap=0&offset=0&limit=21
1.505 | 0.004 | cgi_end;

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