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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:12:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mddb5003n19.y1 Mddb Malus domestica cDNA clone Mddb5003n19 5', mRNA sequence.
CO723666.1:393-414
AAAACTATATTGGCACAGTGACTGAGTATG393ATAAAGAAGCAGGCTGGTACAGGGTGG
Mddb5023i18.y1 Mddb Malus domestica cDNA clone Mddb5023i18 5', mRNA sequence.
CO903678.1:1-22
1ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
Pyrus pyrifolia mRNA, clone: NFR6_24_09, 5' end sequence, expressed in fruit.
HX760646.1:387-408
AAAACTATTTTGGCACAGTGACTGAGTATG387ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
TSA: Pyrus pyrifolia mRNA, contig: contig_10619.
FX429564.1:391-412
AAAACTATTTTGGCACAGTGACTGAGTATG391ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
TSA: Pyrus x bretschneideri Unigene80096_XinShao mRNA sequence.
JR664766.1:401-422
AAAACTATTTTGGCACAGTGACTGAGTATG401ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:19833077-19833098
AAAACTATATTGGCACAGTGACTGAGTATG19833077ATAAAGAAGCAGGCTGGTACAGGGTAGTGTATGAAGATGGTGACTTTGAAGA
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:19983230-19983251
AAAACTATATTGGCACAGTGACTGAGTATG19983230ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:19747424-19747445
AAAACTATATTGGCACAGTGACTGAGTATG19747424ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:18156634-18156655
AAAACTATATTGGCACAGTGACTGAGTATG18156634ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:19390604-19390625
AAAACTATATTGGCACAGTGACTGAGTATG19390604ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
Malus domestica genome assembly, chromosome: 12.
OU696688.1:19451031-19451052
AAAACTATATTGGCACAGTGACTGAGTATG19451031ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
Malus domestica genome assembly, chromosome: 12.
OU744553.1:19595316-19595337
AAAACTATATTGGCACAGTGACTGAGTATG19595316ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
Malus domestica genome assembly, chromosome: 12.
OU744964.1:19091852-19091873
AAAACTATATTGGCACAGTGACTGAGTATG19091852ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
Malus domestica genome assembly, chromosome: 12.
OU745002.1:19318330-19318351
AAAACTATATTGGCACAGTGACTGAGTATG19318330ATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGA
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:12469076-12469097
TCTTCAAAGTCACCATCTTCATACACCACC12469076CTGTACCAGCCTGCTTCTTTATCATACTCAGTCACTGTGCCAATATAGTTTT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:12533128-12533149
TCTTCAAAGTCACCATCTTCATACACCACC12533128CTGTACCAGCCTGCTTCTTTATCATACTCAGTCACTGTGCCAATATAGTTTT
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143383.1:10296579-10296600
GGATTAGCACTTGTTTCTTCATACACCACC10296579CTGTACCAGCCTGCTTCTTTATCATACTCAGTCACGGTGCCAAAGTAGTTTT
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:12458933-12458954
TCTTCAAAGTCACCATCTTCATACACCACC12458933CTGTACCAGCCTGCTTCTTTATCATACTCAGTCACTGTGCCAATATAGTTTT
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:12515508-12515529
TCTTCAAAGTCACCATCTTCATACACCACC12515508CTGTACCAGCCTGCTTCTTTATCATACTCAGTCACTGTGCCAATATAGTTTT
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:9442598-9442619
TCTTCAAAGTCACCATCTTCATACACCACC9442598CTGTACCAGCCTGCTTCTTTATCATACTCAGTCACTGTGCCAAAATAGTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATAAAGAAGCAGGCTGGTACAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATAAAGAAGCAGGCTGGTACAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.490 | 0.481 | search_plus_done; http://172.18.8.135:50400/match?q=ATAAAGAAGCAGGCTGGTACAG&k=0&no_gap=0&offset=0&limit=50
0.636 | 0.146 | search_minus_done; http://172.18.8.135:50400/match?q=CTGTACCAGCCTGCTTCTTTAT&k=0&no_gap=0&offset=0&limit=36
0.640 | 0.004 | cgi_end;

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