GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:11:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:3423953-3423976
TCAATGTTAGTTTTGGTATTTGGATCTGTT3423953ATAACTCATGTGAGGGTGATGCAAAGAATTCATAGAAGAGAATATAACAAAACA
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:3522195-3522218
TCAATGTTAGTTTTGGTATTTGGGTCTGTT3522195ATAACTCATGTGAGGGTGATGCAAAGAATTCATAGAAGAGAATATAACAAAACA
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143365.1:27855586-27855609
TGTTTTGTTATATTCTCTTCTATGAATTCT27855586TTGCATCACCCTCACATGAGTTATAACAGACCCAAATACCAAAACTAACATTGA
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:28810497-28810520
TGTTTTGTTATATTCTCTTCTATGAATTAT28810497TTGCATCACCCTCACATGAGTTATAACAGATCCAAATACCAAAACTAACATTGA
Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:26754098-26754121
TGTTTTGTTATATTCTGTTCTATGAATTCT26754098TTGCATCACCCTCACATGAGTTATAACAGATCCAAATACCAAAACTAACATTGA
Malus domestica genome assembly, chromosome: 8.
OU696684.1:26595997-26596020
TGTTTTGTTATATTCTCTTCTATGAATTCT26595997TTGCATCACCCTCACATGAGTTATAACAGATCCAAATACCAAAACTAACATTGA
Malus domestica genome assembly, chromosome: 8.
OU744549.1:26961663-26961686
TGTTTTGTTATATTCTCTTCTATGAATTCT26961663TTGCATCACCCTCACATGAGTTATAACAGACCCAAATACCAAAACTAACATTGA
Malus domestica genome assembly, chromosome: 8.
OU744960.1:26872962-26872985
TGTTTTGTTATATTCTCTTCTATGAATTCT26872962TTGCATCACCCTCACATGAGTTATAACAGACCCAAATACCAAAACTAACATTGA
Malus domestica genome assembly, chromosome: 8.
OU744998.1:27583214-27583237
TGTTTTGTTATATTCTGTTCTATGAATTCT27583214TTGCATCACCCTCACATGAGTTATAACAGATCCAAATACCAAAACTAACATTGA
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:40147067-40147090
TGTTTTGTTATATGCTCTTCCATGAATTCT40147067TTGCATCACCCTCACATGAGTTATAACAGATCCAAGTAATAAATTTAACATTGA
Pyrus communis genome assembly, chromosome: 15.
OY757082.1:21741004-21741027
TGTTTTGTTATATTCTCTTCCATGAATTCT21741004TTGCATCACCCTCACATGAGTTATAACAGATCCAAATACCAAAACTAACATTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATAACTCATGTGAGGGTGATGCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATAACTCATGTGAGGGTGATGCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.312 | 0.304 | search_plus_done; http://172.18.8.135:50400/match?q=ATAACTCATGTGAGGGTGATGCAA&k=0&no_gap=0&offset=0&limit=50
0.397 | 0.085 | search_minus_done; http://172.18.8.135:50400/match?q=TTGCATCACCCTCACATGAGTTAT&k=0&no_gap=0&offset=0&limit=48
0.403 | 0.006 | cgi_end;

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