GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 01:44:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BR010827 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-030E07 5', mRNA sequence.
EX026183.1:291-310
CTCAACCCAAATCCTCCATTGCTCAGAAGC291ATAACTGCAAGCCCAGCAACGGCAAAGCATCCAGTCATTGTCAAGCTGAT
BR013921 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-074B05 5', mRNA sequence.
EX029277.1:286-305
CTCAACCCAAATCCTCCATTGCTCAGAAGC286ATAACTGCAAGCCCAGCAACGGCAAAGCATCCAGTCATTGTCAAGCTGAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:64488136-64488155
AGTGAAGCAAAGAGTGAGAGAGTGAGTACC64488136ATAACTGCAAGCCCAGCAACGGCAAAGCATCCAGTCATTGTCAAGCTGAT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9592.
FX703029.1:781-800
ATCAGCTTGACAATGACTGGATGCTTTGCC781GTTGCTGGGCTTGCAGTTATGCTTCTGAGCAATGGAGGATTTGGGTTGAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_14812.
FX738781.1:765-784
ATCAGCTTGACAATGACTGGATGCTTTGCC765GTTGCTGGGCTTGCAGTTATGCTTCTGAGCAATGGAGGATTTGGGTTGAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH081N08, complete sequence.
AC155346.1:34697-34716
ATCAGCTTGACAATGACTGGATGCTTTGCC34697GTTGCTGGGCTTGCAGTTATGGTACTCACTCTCTCACTCTTTGCTTCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATAACTGCAAGCCCAGCAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATAACTGCAAGCCCAGCAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.243 | 0.234 | search_plus_done; http://172.18.8.135:50400/match?q=ATAACTGCAAGCCCAGCAAC&k=0&no_gap=0&offset=0&limit=50
0.277 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGCTGGGCTTGCAGTTAT&k=0&no_gap=0&offset=0&limit=47
0.279 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).