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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 02:39:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OL5788F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5788, mRNA sequence.
EH422989.1:119-138
AGGAGGATGTTTTGTGTATTTATGAAGTGA119ATAAGCCCCAATGGTGATCCGACGGCAGAGTTTCCTTGATCTTGTCAAGT
0209471 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV143538.1:145-164
AGGAGGATGTTTTGTGTATTTATGAAGTGA145ATAAGCCCCAATGGTGATCCGACGGCAGAGTTTCCTTGATCTTGTCAAGT
0091388 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV193903.1:87-106
AGGAGGATGTTTTGTGTATTTATGAAGTGA87ATAAGCCCCAATGGTGATCCGACGGCAGAGTTTCCTTGATCTTGTCAAGT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:52940149-52940168
AGGAGGATGTTTTGTGTATTTATGAAGTGA52940149ATAAGCCCCAATGGTGATCCGACGGCAGAGTTTCCTTGATCTTGTCAAGT
Sequence 137405 from Patent WO2008034648.
FB918132.1:1275-1294
ACTTGACAAGATCAAGGAAACTCTGCCGTC1275GGATCACCATTGGGGCTTATTCACTTCATAA
Sequence 137405 from Patent EP2090662.
HB788191.1:1275-1294
ACTTGACAAGATCAAGGAAACTCTGCCGTC1275GGATCACCATTGGGGCTTATTCACTTCATAA
82-E023406-021-020-C22-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022C2220Q, mRNA sequence.
CX188807.1:560-579
ACTTGACAAGATCAAGGAAACTCTGCCGTC560GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-059D09, 3' end sequence.
DK537775.1:626-645
ACTTGACAAGATCAAGGAAACTCTGCCGTC626GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-078D11, 3' end sequence.
DK545043.1:637-656
ACTTGACAAGATCAAGGAAACTCTGCCGTC637GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-092E07, 3' end sequence.
DK550416.1:573-592
ACTTGACAAGATCAAGGAAACTCTGCCGTC573GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-112P11, 3' end sequence.
DK558325.1:641-660
ACTTGACAAGATCAAGGAAACTCTGCCGTC641GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
OL5788R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5788, mRNA sequence.
EH422992.1:363-382
ACTTGACAAGATCAAGGAAACTCTGCCGTC363GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
EST6998 11-19 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B374E071, mRNA sequence.
EL629490.1:540-559
CTTGATAAGATCACTGAAACTCTGGCATCG540GGATCACCATTGGGGCTTATCAACTTTATAAA
BNARO1GH_T3_022_D03_23NOV2006_025 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES901419.1:507-526
ACTTGATAAGATCAAGGAAACTCTGCCATC507GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
BNSCS4CT_UP_173_D11_25MAY2007_089 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV071758.1:71-90
ACTTGACAAGATCAAGGAAACTCTGCCGTC71GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5356.
FX699080.1:1509-1528
ACTTGACAAGATCAAGGAAACTCTTCCATC1509GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_7303.
FX733383.1:1474-1493
ACTTGACAAGATCAAGGAAACTCTTCCATC1474GGATCACCATTGGGGCTTATTCATTTCATAAATACACAAAACAGCCTCCT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:6592089-6592108
ACTTGATAAGATCAAGGAAACTCTGCCATC6592089GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:5542089-5542108
ACTTGATAAGATCAAGGAAACTCTGCCATC5542089GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:6388240-6388259
ACTTGACAAGATCAAGGAAACTCTGCCGTC6388240GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica rapa genome, scaffold: A06.
LR031569.1:5442109-5442128
ACTTGATAAGATCAAGGAAACTCTGCCATC5442109GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:6202998-6203017
ACTTGACAAGATCAAGGAAACTCTGCCGTC6202998GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:5545487-5545506
ACTTGATAAGATCAAGGAAACTCTGCCATC5545487GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
Nasturtium officinale genome assembly, chromosome: 2.
OY978500.1:4050930-4050949
ACTTGAAAAGATCAAGGAAACTCTACCATC4050930GGATCACCATTGGGGCTTATTCACTTCATAAAACACCAAATGCGTATTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATAAGCCCCAATGGTGATCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATAAGCCCCAATGGTGATCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.246 | 0.237 | search_plus_done; http://172.18.8.135:50400/match?q=ATAAGCCCCAATGGTGATCC&k=0&no_gap=0&offset=0&limit=50
0.685 | 0.439 | search_minus_done; http://172.18.8.135:50400/match?q=GGATCACCATTGGGGCTTAT&k=0&no_gap=0&offset=0&limit=46
0.698 | 0.013 | cgi_end;

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