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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 22:03:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Podarcis cretensis genome assembly, chromosome: 6.
OX638154.1:90529934-90529953
AGTTTTTATGTACCAACTCAATATTACGAG90529934ATAATACATGATTTGTTGCCATGCCAAATGGTGGAAGGTACTGTGAGTTC
131A02_546919 Douglas-fir cDNA library PmIFG_73-6 Pseudotsuga menziesii var. menziesii cDNA clone Df131-A02 5, mRNA sequence.
CN636321.1:181-200
AGGTAGAGACCAACTAGTCACACATTACTG181ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCCGCTGCTGGTAATC
WS0064.B21_G03 IS-B-A-7 Picea engelmannii x Picea glauca cDNA clone WS0064_G03 3', mRNA sequence.
CO205546.1:197-216
AGAGGTAGACCATCTAGTCACAAATTACTG197ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCTGCTGCTGCTGCTG
WS0036.B21_E07 WS-X-A-3 Picea glauca cDNA clone WS0036_E07 3', mRNA sequence.
CO243813.1:196-215
AGAGGTAGACCATCTAGTCACACATTACTG196ATAATACATGATTTGTTGCCGCATAGCAGCTGCTGCTGCTGCTGCTGCTG
WS00966.C21_D20 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00966_D20 3, mRNA sequence.
DR476003.1:286-305
AGAGGGAGACCATCTAGTCCCAAATTACTG286ATAATACATGATTTGTTGCCCCATAGCAGCAGCTGCTGCTGCTGCTGCTG
WS02814.CR_L05 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02814_L05 3, mRNA sequence.
DR478706.1:195-214
AGAGGTAGACCATCTAGTCACACATTACTG195ATAATACATGATTTGTTGCCGCATAGCAGCTGCTGCTGCTGCTGCTGCTG
WS0285.BR_N15 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS0285_N15 3, mRNA sequence.
DR481307.1:201-220
AGAGGTAGACCATCTAGTCACACATTACTG201ATAATACATGATTTGTTGCCGCATAGCAGCTGCTGCTGCTGCTGCTGCTG
WS0298.BR_E19 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0298_E19 3, mRNA sequence.
DR495530.1:236-255
AGAGGTAGACCATCTAGTCACACATTACTG236ATAATACATGATTTGTTGCCGCATAGCAGCTGCTGCTGCTGCTGCTGCTG
WS0339.C21_A15 WS-SE-N-A-18 Picea glauca cDNA clone WS0339_A15 3, mRNA sequence.
DR585374.1:203-222
AGAGGTAGACCATCTAGTCACAAATTACTG203ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCTGCTGCTGCTGCTG
WS03410.C21_M12 WS-SE-N-A-19 Picea glauca cDNA clone WS03410_M12 3, mRNA sequence.
DR586341.1:202-221
AGAGGTAGACCATCTAGTCACAAATTACTG202ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCTGCTGCTGCTGCTG
GQ0172.TB_L12 GQ017: Immature somatic EMBRYOS Picea glauca cDNA clone GQ0172_L12 3', mRNA sequence.
DV979226.2:218-237
AGAGGTAGACCATCTAGTCACAAATTACTG218ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCTGCTGCTGCTGCTG
GQ0173.TB_H21 GQ017: Immature somatic EMBRYOS Picea glauca cDNA clone GQ0173_H21 3', mRNA sequence.
DV979389.2:156-175
AGAGGTAGACCATCTAGTCACAAATTACTG156ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCTGCTGCTGCTGCTG
GQ0204.TB_B03 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0204_B03 3', mRNA sequence.
DV985807.2:147-166
AGAGGTAGACCATCTAGTCACAAATTACTG147ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCTGCTGCTGCTGCTG
GQ02012.TB_M01 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02012_M01 3', mRNA sequence.
DV987850.2:9-28
AATTACTG9ATAATACATGATTTGTTGCCGCCCCTTTACAGCTGCTGCTGCTGCTGCTG
GQ02012.B7_M01 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02012_M01 3', mRNA sequence.
DV988640.2:60-79
AGAGGTACACTTTCTAGTCACAAATTACTG60ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCTGCTGCTGCTGCTG
pm_OSU_shoot_CA_2003-04_021D11 Douglas-fir cold acclimating cDNA library 2003-2004 (CA_2003-04) Pseudotsuga menziesii var. menziesii cDNA clone pm_OSU_WP2_CDB_021_D11, mRNA sequence.
ES419298.1:249-268
AGGTAGAGACCAACTAGTCACACATTACTG249ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCCGCTGCTGGTAATC
GQ02804.SP6_E15 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02804_E15 3', mRNA sequence.
EX312638.1:232-251
AGAGGTAGACCATCTAGTCACAAATTACTG232ATAATACATGATTTGTTGCCGCAAAGCAGCAGCTGCTGCTGCTGCTGCTG
GQ02907.SP6_N17 GQ029 - Xylem scrapings - AT NITE Picea glauca cDNA clone GQ02907_N17 3', mRNA sequence.
EX334782.1:185-204
AGAGGTAGACCTTCTAGTCACACATTACTG185ATAATACATGATTTGTTGCCGCATAGCAGCTGCTGCTGCTGCTGCTGCTG
GQ03006.SP6_N09 GQ030 - Xylem planings - daytime and seasonal Picea glauca cDNA clone GQ03006_N09 3', mRNA sequence.
EX338759.1:226-245
AGAGGTAGGCCATCTAGTCACAAATTACTG226ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCTGCTGCTGCTGCTG
GQ03010.SP6_G21 GQ030 - Xylem planings - daytime and seasonal Picea glauca cDNA clone GQ03010_G21 3', mRNA sequence.
EX340887.1:244-263
AGAGGTAGGCCATCTAGTCACAAATTACTG244ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCTGCTGCTGCTGCTG
GQ04008.SP6.r_J11 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ04008_J11 3', mRNA sequence.
GO370439.1:232-251
AGAGGTAGACCATCTAGTCACACATCACTG232ATAATACATGATTTGTTGCCGCATAGCAGCTGCTGCTGCTGCTGCTGCTG
TSA: Larix kaempferi PEMC1231.Lakaproemb mRNA sequence.
JR141968.1:218-237
CGTAGACCAACTAGTCACACCACATTACTG218ATAATACATGATTTGTTGCCGCATAGCGGCAGCTGAATATAGCTATAAAA
TSA: Larix kaempferi PEMC1231.Lakaproemb mRNA sequence.
JR141968.1:314-333
CGTAGACCAACTAGTCACACCACATTACTG314ATAATACATGATTTGTTGCCGCATAGCAGCAGCTGCAGCAGCTGCCGCTG
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:17191835-17191854
CACCAAGCCTTGAGATAAAGTTTTGTAACC17191835ATAATACATGATTTGTTGCCTCAAATCCATGATATAACAACAGCATATTG
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:15604847-15604866
CACCAAGCCTTGAGATAAAGTTTTGTAACC15604847ATAATACATGATTTGTTGCCTCAAATCCATGATATAACAATAGCATATTG
Malus domestica genome assembly, chromosome: 14.
OU696690.1:16867502-16867521
CACCAAGCCTTGAGATAAAGTTTTGTAACC16867502ATAATACATGATTTGTTGCCTCAAATCCATGATATAACAATAGCATATTG
Malus domestica genome assembly, chromosome: 14.
OU744555.1:17175525-17175544
CACCAAGCCTTGAGATAAAGTTTTGTAACC17175525ATAATACATGATTTGTTGCCTCAAATCCATGATATAACAATAGCATCTTG
Malus domestica genome assembly, chromosome: 14.
OU744966.1:17217124-17217143
CACCAAGCCTTGAGATAAAGTTTTGTAACC17217124ATAATACATGATTTGTTGCCTCAAATCCATGATATAACAATAGCATATTG
Malus domestica genome assembly, chromosome: 14.
OU745004.1:17368030-17368049
CACCAAGCCTTGAGATAAAGTTTTGTAACC17368030ATAATACATGATTTGTTGCCTCAAATCCATGATATAACAATAGCATATTG
Macrobrachium nipponense isolate FS-2020 chromosome 32.
CP062034.1:41006452-41006471
CAACTCCTGAGTTAATTCCGATTAAAATAT41006452ATAATACATGATTTGTTGCCAGGAGACTCTCTCTCTCCCTCTCTCTCTCT
Onychomys arenicola genome assembly, chromosome: 7.
OX460353.1:99735916-99735935
GGTTTTACATTTCCTTCCATTATGCATAAA99735916GGCAACAAATCATGTATTATAGTTGAGGTACAAGTTCAGGATTACATGAA
Onychomys leucogaster genome assembly, chromosome: 7.
OX460377.1:100371384-100371403
AGTTTTACATTTCCTTCCATTATGCATAAA100371384GGCAACAAATCATGTATTATAGTTGAGGTACAAGTTCAGGATTACATGAA
Onychomys leucogaster genome assembly, chromosome: 7.
OX460424.1:98020464-98020483
AGTTTTACATTTCCTTCCATTATGCATAAA98020464GGCAACAAATCATGTATTATAGTTGAGGTACAAGTTCAGGATTACATGAA
Onychomys arenicola genome assembly, chromosome: 7.
OX460448.1:101413465-101413484
AGTTTTACATTTCCTTCCATTATGCATAAA101413465GGCAACAAATCATGTATTATAGTTGAGGTACAAGTTCAGGATTACATGAA
Vipera ursinii genome assembly, chromosome: 3.
OX365966.1:130012614-130012633
TTAGGCAGCAGATTCTAAGTAGCGTGGAAA130012614GGCAACAAATCATGTATTATTTAATTTGTTCATATTGGATTTTTATTACC
GQ0223.B7_K20 GQ022: ROOT XYLEM - mature trees Picea glauca cDNA clone GQ0223_K20 3', mRNA sequence.
DV989801.2:606-625
CAGCAGCAGCAGCAGCAGCTGCTGCTATGC606GGCAACAAATCATGTATTATCAGTAATTTGTGACTAGATGGTCTACCTCT
GQ0225.B7_L04 GQ022: ROOT XYLEM - mature trees Picea glauca cDNA clone GQ0225_L04 3', mRNA sequence.
DV990296.2:545-564
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC545GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGAAGGTCTACCTCT
WS0364.C21_F22 SS-B-N-21 Picea sitchensis cDNA clone WS0364_F22 3', mRNA sequence.
ES246138.1:668-687
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC668GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS03723.C21_P05 SS-B-N-22 Picea sitchensis cDNA clone WS03723_P05 3', mRNA sequence.
ES254684.1:670-689
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC670GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS03727.C21_E19 SS-B-N-22 Picea sitchensis cDNA clone WS03727_E19 3', mRNA sequence.
ES255827.1:699-718
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC699GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS0391.C21_E20 SS-B-24 Picea sitchensis cDNA clone WS0391_E20 3', mRNA sequence.
ES260825.1:647-666
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC647GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS0391.C21_G15 SS-B-24 Picea sitchensis cDNA clone WS0391_G15 3', mRNA sequence.
ES260862.1:580-599
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC580GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS0394.C21_L18 SS-B-24 Picea sitchensis cDNA clone WS0394_L18 3', mRNA sequence.
ES261938.1:657-676
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC657GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS0428.C21_I10 SS-NE-27 Picea sitchensis cDNA clone WS0428_I10 3', mRNA sequence.
ES671405.1:643-662
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC643GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS02771.CR_B10 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02771_B10 3', mRNA sequence.
ES857175.1:569-588
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC569GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS02772.CR_A09 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02772_A09 3', mRNA sequence.
ES857496.1:584-603
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC584GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS02778.CR_O22 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02778_O22 3', mRNA sequence.
ES859633.1:594-613
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC594GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS02798.CR_C10 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02798_C10 3', mRNA sequence.
ES867136.1:695-714
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC695GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS02827.CR_H14 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02827_H14 3', mRNA sequence.
ES869547.1:643-662
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC643GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
WS02930.CR_M18 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02930_M18 3', mRNA sequence.
ES875714.1:635-654
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC635GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
GQ02804.B7_E15 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02804_E15 5', mRNA sequence.
EX312297.1:398-417
CAGCAGCAGCAGCAGCAGCTGCTGCTTTGC398GGCAACAAATCATGTATTATCAGTAATTTGTGACTAGATGGTCTACCTCT
GQ02907.B7_N17 GQ029 - Xylem scrapings - AT NITE Picea glauca cDNA clone GQ02907_N17 5', mRNA sequence.
EX334455.1:488-507
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC488GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGAAGGTCTACCTCT
GQ03010.B7_G21 GQ030 - Xylem planings - daytime and seasonal Picea glauca cDNA clone GQ03010_G21 5', mRNA sequence.
EX340538.1:424-443
CAGCAGCAGCAGCAGCAGCTGCTGCTATGC424GGCAACAAATCATGTATTATCAGTAATTTGTGACTAGATGGCCTACCTCT
GQ03224.B7_O23 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03224_O23 5', mRNA sequence.
EX372409.1:665-684
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC665GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
GQ03326.B7_I11 GQ033 - Terminal leader (Normalized library) Picea glauca cDNA clone GQ03326_I11 5', mRNA sequence.
EX393841.1:327-346
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC327GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGAAGGTCTACCTCT
TSA: Abies alba contig17268.Aaseedling mRNA sequence.
JV154415.1:1214-1233
CAGCAGCAGCAGCAGCAGCTGCTGCTATGC1214GGCAACAAATCATGTATTATCAGTAATGGGTGACTAGATAGTCTAACTTT
estPmaLU_SB12 Picea mariana cDNA libraries Picea mariana STS cDNA, sequence tagged site.
BV729051.1:487-506
CAGCAGCAGCAGCAGCAGCTGCTGCTATGC487GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
Picea mariana putative RNA-binding protein (Sb12) mRNA, partial cds.
AF051208.1:487-506
CAGCAGCAGCAGCAGCAGCTGCTGCTATGC487GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
Larix laricina putative RNA-binding protein (Sb12) gene, partial cds.
AF124748.1:516-535
CAGCGGCAGCTGCTGCAGCTGCTGCTATGC516GGCAACAAATCATGTATTATCAGTAATGTGGTGTGACTAGTTGGTCTACG
Larix laricina putative RNA-binding protein (Sb12) gene, partial cds.
AF124748.1:611-630
TTTTATAGCTATATTCAGCTGCCGCTATGC611GGCAACAAATCATGTATTATCAGTAATGTGGTGT
Picea glauca clone GQ04008_J11 mRNA sequence.
BT118651.1:1580-1599
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC1580GGCAACAAATCATGTATTATCAGTGATGTGTGACTAGATGGTCTACCTCT
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:14004703-14004722
CAAGATTCTATTGTTATATCATGGATTTGA14004703GGCAACAAATCATGTATTATGGTTACAAAACTTTATCTTAAGGCTTGGTG
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:15032375-15032394
CAATATGCTATTGTTATATCATGGATTTGA15032375GGCAACAAATCATGTATTATGGTTACAAAACTTTATCTCAAGGCTTGGTG
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:13702354-13702373
CAAGATTCTATTGTTATATCATGGATTTGA13702354GGCAACAAATCATGTATTATGGTTACAAAACTTTATCTTAAGGCTTGGTG
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:15186739-15186758
CAAGATGCTATTGTTATATCATGGATTTGA15186739GGCAACAAATCATGTATTATGGTTACAAAACTTTATCTCAAGGCTTGGTG
Picea sitchensis clone WS0285_N15 unknown mRNA.
EF678228.1:1580-1599
CAGCAGCAGCAGCAGCAGCAGCTGCTATGC1580GGCAACAAATCATGTATTATCAGTAATGTGTGACTAGATGGTCTACCTCT
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:14753534-14753553
CAAGATGCTATTGTTATATCATGGATTTGA14753534GGCAACAAATCATGTATTATGGTTACAAAACTTTATCTCAAGGCTTGGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATAATACATGATTTGTTGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATAATACATGATTTGTTGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.974 | 0.965 | search_plus_done; http://172.18.8.135:50400/match?q=ATAATACATGATTTGTTGCC&k=0&no_gap=0&offset=0&limit=50
1.997 | 1.023 | search_minus_done; http://172.18.8.135:50400/match?q=GGCAACAAATCATGTATTAT&k=0&no_gap=0&offset=0&limit=20
2.022 | 0.025 | cgi_end;

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