GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:24:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2AN75JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW729131.1:34-55
CTGAGTCTTAAAAAAATGAAAAACTCCCTA34ATACAGAGGAAGGACCCGTCAAACCAAGGGGAAACAGAGCAGAGGAACGGCA
RR1F137JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD529971.1:396-417
CTGAGTCTTAAAAAAATAAAAAACTCCCTA396ATACAGAGGAAGGACCCGTCAAACCAAGGGAAAACAGAGCAGAGGAACGGCA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_4497.
FX668195.1:115-136
TGAGTCTTAAAAAAATAAAAAAACTCCCTA115ATACAGAGGAAGGACCCGTCAAACCAAGGAAAAACAGAGCAGAGGAACGGCA
Raphanus sativus cultivar WK10039 clone RsH002C8, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.
AC255289.1:23863-23884
TGAGTCTTAAAAAAATAAAAAAACTCCCTA23863ATACAGAGGAAGGACCCGTCAAACCAAGGAAAAACAGAGCAGAGGAACGGCA
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:35905879-35905900
CTGAGTCTTAAAAAAATAAAAAACTCCCTA35905879ATACAGAGGAAGGACCCGTCAAACCAAGGGAAAACAGAGCAGAGGAACGGCA
RS2AN75TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW724401.1:627-648
TGCCGTTCCTCTGCTCTGTTTCCCCTTGGT627TTGACGGGTCCTTCCTCTGTATTAGGGAGTTTTTCATTTTTTTAAGACTCAG
RS2BA34TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW726078.1:389-410
TGCCGTTCCTCTGCTCTGTTTTCCCTTGGT389TTGACGGGTCCTTCCTCTGTATTAGGGAGTTTTTTATTTTTTTAAGACTCAG
RR1F137TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD533919.1:584-605
TGCCGTTCCTCTGCTCTGTTTTCCCTTGGT584TTGACGGGTCCTTCCTCTGTATTAGGGAGTTTTTTATTTTTTTAAGACTCAG
RS2FT75TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD571711.1:582-603
TGCCGTTCCTCTGCTCTGCTTTCCCTTGGT582TTGACGGGTCCTTCCTCTGTATTAGGGAGTTTTTTTATTTTTTTAAGACTCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_37707.
FX792602.1:723-744
TGCCGTTCCTCTGCTCTGTTTTCCCTTGGT723TTGACGGGTCCTTCCTCTGTATTAGGGAGTTTTTTATTTTTTTAAGACTCAG
TSA: Raphanus sativus RS18119 mRNA sequence.
JT802666.1:495-516
TGCCGTTCCTCTGCTCTGTTTTTCCTTGGT495TTGACGGGTCCTTCCTCTGTATTAGGGAGTTTTTTTATTTTTTTTAAGACTC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:9252829-9252850
TGCCGTTCCTCTGCTCTGTTTTTCCTTGGT9252829TTGACGGGTCCTTCCTCTGTATTAGGGAGTTTTTTTATTTTTTTAAGACTCA
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:17744620-17744641
TGCCGTTCCTCTGCTCTGTTTTCCCTTGGT17744620TTGACGGGTCCTTCCTCTGTATTAGGGAGTTTTTTATTTTTTTAAGACTCAG
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:9252829-9252850
TGCCGTTCCTCTGCTCTGTTTTTCCTTGGT9252829TTGACGGGTCCTTCCTCTGTATTAGGGAGTTTTTTTATTTTTTTAAGACTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATACAGAGGAAGGACCCGTCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATACAGAGGAAGGACCCGTCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.230 | 0.221 | search_plus_done; http://172.18.8.135:50400/match?q=ATACAGAGGAAGGACCCGTCAA&k=0&no_gap=0&offset=0&limit=50
0.499 | 0.269 | search_minus_done; http://172.18.8.135:50400/match?q=TTGACGGGTCCTTCCTCTGTAT&k=0&no_gap=0&offset=0&limit=45
0.505 | 0.006 | cgi_end;

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