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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 11:23:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.
AC189247.2:6086-6105
AAAAAGGTCCAACTTTTACACGAACGTGAC6086ATACAGCCGGACCACTTAACGATAGATTTGAATATGTGACTTTCATGATA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:47492629-47492648
AGAAAGGTCCAACTTTTACACGAACGTGAC47492629ATACAGCCGGACCACTTAACGATAGATTTGAAAATGTGACTTTCATGACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011L09, complete sequence.
AC189224.1:2230-2249
TATCATGAAAGTCACATATTCAAATCTATC2230GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTTT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:10481894-10481913
TATCATGAAAGTCACATATTCAAATCTATC10481894GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTTT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:9246100-9246119
TATCATGAAAGTCACATATTCAAATCTATC9246100GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTTT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:11709440-11709459
TGTCATGAAAGTCACATTTTCAAATCTATC11709440GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTCT
Brassica rapa genome, scaffold: A06.
LR031569.1:9041392-9041411
TATCATGAAAGTCACATATTCAAATCTATC9041392GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTTT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:11414699-11414718
TGTCATGAAAGTCACATTTTCAAATCTATC11414699GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTCT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:9878121-9878140
TATCATGAAAGTCACATATTCAAATCTATC9878121GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATACAGCCGGACCACTTAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATACAGCCGGACCACTTAAC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.174 | 0.165 | search_plus_done; http://172.18.8.135:50400/match?q=ATACAGCCGGACCACTTAAC&k=0&no_gap=0&offset=0&limit=50
0.282 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=GTTAAGTGGTCCGGCTGTAT&k=0&no_gap=0&offset=0&limit=48
0.287 | 0.005 | cgi_end;

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