GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 03:06:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828136.1:100158703-100158722
CTTTTTTGCAAAGAATTGGTTCGATAAACC100158703ATACAGTCTCCATGTAATCGAAATTTGCTGCTGGCTACATCTCCACCTTC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828185.1:96047498-96047517
CTTTTTTGCAAAGAATTGGTTCGATAAACC96047498ATACAGTCTCCATGTAATCGAAATTTGCTGCTGGCTACATCTCCACCTTC
Hordeum vulgare genome assembly, chromosome: 5H.
OX459927.1:97752890-97752909
CTTTTTTGCAAAGAATTGGTTCGATAAACC97752890ATACAGTCTCCATGTAATCGAAATTTGCTGCTGGCTACATCTCCACCTTC
Hordeum vulgare genome assembly, chromosome: 5H.
OX460016.1:100893799-100893818
CTTTTTTGCAAAGAATTGGTTCGATAAACC100893799ATACAGTCTCCATGTAATCGAAATTTGCTGCTGGCTACATCTCCACCTTC
Hordeum vulgare genome assembly, chromosome: 5H.
OX638657.1:99541267-99541286
CTTTTTTGCAAAGAATTGGTTCGATAAACC99541267ATACAGTCTCCATGTAATCGAAATTTGCTGCTGGCTACATCTCCACCTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATACAGTCTCCATGTAATCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATACAGTCTCCATGTAATCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.090 | 0.081 | search_plus_done; http://172.18.8.135:50400/match?q=ATACAGTCTCCATGTAATCG&k=0&no_gap=0&offset=0&limit=50
0.105 | 0.015 | search_minus_done; http://172.18.8.135:50400/match?q=CGATTACATGGAGACTGTAT&k=0&no_gap=0&offset=0&limit=45
0.105 | 0.000 | cgi_end;

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