GGGenome | Results

2025-04-08 22:15:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

OPZE00019 Elaeis guineensis zygotic embryo Elaeis guineensis cDNA clone 183-B4-T3.seq, mRNA sequence.
EL694934.1:255-278

CCCCTGGCCTTCAAGAAGCCTCGCTTCCTC255ATACCGGCTTAGAAGCCACCACTTCTAAGTTAAATCTACATAAATTTGTATTAT

Contig62 DEGdwarf cDNA library from oil palm spear leaves Elaeis guineensis cDNA clone Contig62, mRNA sequence.
JZ905568.1:233-256

CCCCTGGCCTTCAAGAAGCCTCGCTTCCTC233ATACCGGCTTAGAAGCCACCACTTCTAAGTTAAATCTACATAAATTTGTATTAT

Elaeis guineensis EST, clone (6lib)_isotig06359.
LM624157.1:791-814

CCCCTGGCCTTCAAGAAGCCTCGCTTCCTC791ATACCGGCTTAGAAGCCACCACTTCTAAGTTAAATCTACATAAATTTGTATTAT

Elaeis guineensis clone estEgSNP10 zinc-finger protein (ZFP) mRNA, partial cds.
JX438710.1:790-813

CCCCTGGCCTTCAAGAAGCCTCGCTTCCTC790ATACCGGCTTAGAAGCCACCACTTCTAAGTTAAATCTACATAAATTTGTATTAT

TSA: Elaeis guineensis isotig08567.Elguifruit mRNA sequence.
JO095797.1:271-294

ATAATACAAATTTATGTAGATTTAACTTAG271AAGTGGTGGCTTCTAAGCCGGTATGAGGAAGCGAGGCTTCTTGAAGGCCAGGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.372 | 0.363 | search_plus_done; http://172.18.8.135:50400/match?q=ATACCGGCTTAGAAGCCACCACTT&k=0&no_gap=0&offset=0&limit=50
0.412 | 0.040 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTGGTGGCTTCTAAGCCGGTAT&k=0&no_gap=0&offset=0&limit=46
0.413 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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