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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 09:03:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

54ACDHPE_UP_013_F10_10NOV2004_070 Brassica napus DH12075 PEG Brassica napus cDNA 5', mRNA sequence.
DY002266.1:97-116
CATGAATTCAAGATTTCTTGCTTGGCGGAG97ATACGAGCGTTGTTTCCTCCTGAACACAACCCATTCTATGCTGGTTTTGG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_29045.
FX683055.1:117-136
CATGAATTCAAGATTTCTTGCTTGGCGGAG117ATACGAGCGTTGTTTCCTCCTGAACACAACCCATTCTATGCTGGTTTTGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_71739.
FX752532.1:352-371
CATGAATTCAAGATTTCTTGCTTGGAGGAA352ATACGAGCGTTGTTTCCTCCCGAACACAACCCGTTCTATGCTGGTTTTGG
Brassica rapa subsp. pekinensis clone KBrH071G03, complete sequence.
FP236364.1:19960-19979
TCTTTTTCTTAAATCTCTCTCTCACAGGAA19960ATACGAGCGTTGTTTCCTCCCGAACACAACCCGTTCTATGCTGGTTTTGG
Brassica rapa subsp. pekinensis clone KBrB009D15, complete sequence.
FP340608.1:16142-16161
TCTTTTTCTTAAATCTCTCTCTCACAGGAA16142ATACGAGCGTTGTTTCCTCCCGAACACAACCCGTTCTATGCTGGTTTTGG
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:59997356-59997375
TCTTTTTCTTAAATCTCTCTCTCACAGGAA59997356ATACGAGCGTTGTTTCCTCCCGAACACAACCCGTTCTATGCTGGTTTTGG
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:49415533-49415552
CTGTTCTTTTTTTACTCTTTTGGACAGGAG49415533ATACGAGCGTTGTTTCCTCCTGAACACAACCCTTTCTATGCTGGTTTTGG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:44791516-44791535
TCTTTTTCTTAAATCTCTCTCTCACAGGAA44791516ATACGAGCGTTGTTTCCTCCCGAACACAACCCGTTCTATGCTGGTTTTGG
Brassica rapa genome, scaffold: A06.
LR031569.1:54878800-54878819
TTTTTCTTTTTCTTAAATCTCTCACAGGAA54878800ATACGAGCGTTGTTTCCTCCCGAACACAACCCGTTCTATGCTGGTTTTGG
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:42857812-42857831
GTTTTTTTTTTTAACTCTTTTGAACAGGAG42857812ATACGAGCGTTGTTTCCTCCTGAACACAACCCATTCTATGCTGGTTTTGG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:58543082-58543101
TTTTTCTTTTTCTTAAATCTCTCACAGGAA58543082ATACGAGCGTTGTTTCCTCCCGAACACAACCCGTTCTATGCTGGTTTTGG
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:42857812-42857831
GTTTTTTTTTTTAACTCTTTTGAACAGGAG42857812ATACGAGCGTTGTTTCCTCCTGAACACAACCCATTCTATGCTGGTTTTGG
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF09L07, 3'-end sequence.
FY071423.1:458-477
CCAAAACCAGCATAGAACGGGTTGTGTTCG458GGAGGAAACAACGCTCGTATTTCCTCCAAGCAAGAAATCTTGAATTCATG
0233026 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO927793.1:501-520
CCAAAACCAGCATAGAATGGGTTGTGTTCA501GGAGGAAACAACGCTCGTATCTCCGCCAAGCAAGAAATCTTGAATTCATG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_16420.
FX692789.1:431-450
CCAAAACCAGCATAGAACGGGTTGTGTTCG431GGAGGAAACAACGCTCGTATTTCCTCCAAGCAAGAAATCTTGAATTCATG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_10596.
FX692863.1:467-486
CCAAAACCAGCATAGAATGGGTTGTGTTCA467GGAGGAAACAACGCTCGTATCTCCGCCAAGCAAGAAATCTTGAATTCATG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_17773.
FX728148.1:433-452
CCAAAACCAGCATAGAATGGGTTGTGTTCA433GGAGGAAACAACGCTCGTATCTCCGCCAAGCAAGAAATCTTGAATTCATG
BOGFZ71TF BOGF Brassica oleracea genomic clone BOGFZ71, genomic survey sequence.
BH511647.1:121-140
CCAAAACCAGCATAGAATGGGTTGTGTTCA121GGAGGAAACAACGCTCGTATCTCCTGTTCAAAAGAGTAAGAAAAACAGTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
AC189413.1:2486-2505
CCAAAACCAGCATAGAACGGGTTGTGTTCG2486GGAGGAAACAACGCTCGTATTTCCTGTGAGAGAGAGATTTAAGAAAAAGA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:13080108-13080127
CCAAAACCAGCATAGAATGGGTTGTGTTCA13080108GGAGGAAACAACGCTCGTATCTCCTGTTCAAAAGAGTAAAAAAAAAACAG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:12537989-12538008
CCAAAACCAGCATAGAATGGGTTGTGTTCA12537989GGAGGAAACAACGCTCGTATCTCCTGTTCAAAAGAGTAAAAAAAAACAGT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:19497172-19497191
CCAAAACCAGCATAGAAAGGGTTGTGTTCA19497172GGAGGAAACAACGCTCGTATCTCCTGTCCAAAAGAGTAAAAAAAGAACAG
Brassica rapa genome, scaffold: A09.
LR031568.1:12599106-12599125
CCAAAACCAGCATAGAATGGGTTGTGTTCA12599106GGAGGAAACAACGCTCGTATCTCCTGTTCAAAAGAGTAAAAAAAAACAGT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:19542070-19542089
CCAAAACCAGCATAGAAAGGGTTGTGTTCA19542070GGAGGAAACAACGCTCGTATCTCCTGTCCAAAAGAGTAAAAAAAAAACAG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:12925449-12925468
CCAAAACCAGCATAGAATGGGTTGTGTTCA12925449GGAGGAAACAACGCTCGTATCTCCTGTTCAAAAGAGTAAAAAAAAACAGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATACGAGCGTTGTTTCCTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATACGAGCGTTGTTTCCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.385 | 0.376 | search_plus_done; http://172.18.8.135:50400/match?q=ATACGAGCGTTGTTTCCTCC&k=0&no_gap=0&offset=0&limit=50
0.668 | 0.283 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGGAAACAACGCTCGTAT&k=0&no_gap=0&offset=0&limit=38
0.676 | 0.009 | cgi_end;

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