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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:04:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 95370 from Patent WO2008034648.
FB876097.1:1166-1185
AAAGTGATTGTAATTGTACTGCGTTTGCTA1166ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACCGGAGAT
Sequence 95402 from Patent WO2008034648.
FB876129.1:1166-1185
AAAGTGATTGTAATTGTACTGCGTTTGCTA1166ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACAGGAGAT
Sequence 95490 from Patent WO2008034648.
FB876217.1:1151-1170
AAAGTGATTGTAACTGTACTGCGTTTGCTA1151ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACCGGAGAT
Sequence 95370 from Patent EP2090662.
HB746156.1:1166-1185
AAAGTGATTGTAATTGTACTGCGTTTGCTA1166ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACCGGAGAT
Sequence 95402 from Patent EP2090662.
HB746188.1:1166-1185
AAAGTGATTGTAATTGTACTGCGTTTGCTA1166ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACAGGAGAT
Sequence 95490 from Patent EP2090662.
HB746276.1:1151-1170
AAAGTGATTGTAACTGTACTGCGTTTGCTA1151ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACCGGAGAT
Brassica rapa subsp. pekinensis clone KBrB123I09, complete sequence.
FP090262.1:7378-7397
AAAGTGATTGTAATTGTACTGCGTTTGCTA7378ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACCGGAGAT
Brassica rapa BcRK5 gene for receptor kinase 5, complete cds.
AB041621.1:2036-2055
AAAGTGATTGTAACTGTACTGCGTTTGCTA2036ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACCGGAGAT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:47095463-47095482
AAAGTGATTGTAATTGTACTGCGTTTGCTA47095463ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACAGGAGAT
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:7371789-7371808
ATAATGATTGTAATTGTACGGCGTTTGCTA7371789ATACGGATATCCGAGGTGGTGGATCGGGTTGCGTTGTGTGGACCGGAGAG
B.oleracea mRNA for receptor-like kinase, SFR2.
X98520.1:1179-1198
AAAGTGATTGTAATTGTACTGCGTTTGCTA1179ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACAGGAGAT
B.oleraceae gene encoding serine/threonine kinase, ARLK.
Y12530.1:1166-1185
AAAGTGATTGTAATTGTACTGCGTTTGCTA1166ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACCGGAGAT
Brassica oleracea SFR2 gene, partial.
Y18257.1:49-68
AAAGTGATTGTAATTGTACTGCGTTTGCTA49ATACGGATATCCGAGGTGGTGGATCGGGTTGTGTTGTGTGGACAGGAGAT
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:6222855-6222874
ATCTCCGGTCCACACAACACAACCCGATCC6222855ACCACCTCGGATATCCGTATTAGCAAACGCAGTACAATTGCAATCACTTT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:6448740-6448759
ATCTCCGGTCCACACAACACAACCCGATCC6448740ACCACCTCGGATATCCGTATTAGCAAACGCAGTACAATTACAATCACTTT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:9443848-9443867
ATCTCCGATCCACACAACACAACCCGATCC9443848ACCACCTCGGATATCCGTATTAGCAAACGCAGTACAATTACAATCACTTT
Brassica rapa genome, scaffold: A01.
LR031571.1:6270465-6270484
ATCTCCGGTCCACACAACACAACCCGATCC6270465ACCACCTCGGATATCCGTATTAGCAAACGCAGTACAGTTACAATCACTTT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:9288049-9288068
ATCTCCGATCCACACAACACAACCCGATCC9288049ACCACCTCGGATATCCGTATTAGCAAACGCAGTACAATTACAATCACTTT
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:6294817-6294836
ATCTCCGGTCCACACAACACAACCCGATCC6294817ACCACCTCGGATATCCGTATTAGCAAACGCAGTACAGTTACAATCACTTT
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:36246347-36246366
CTCTCCGGTCCACACAACGCAACCCGATCC36246347ACCACCTCGGATATCCGTATTAGCAAACGCCGTACAATTACAATCATTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATACGGATATCCGAGGTGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATACGGATATCCGAGGTGGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.270 | 0.262 | search_plus_done; http://172.18.8.135:50400/match?q=ATACGGATATCCGAGGTGGT&k=0&no_gap=0&offset=0&limit=50
0.408 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=ACCACCTCGGATATCCGTAT&k=0&no_gap=0&offset=0&limit=37
0.413 | 0.005 | cgi_end;

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