GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 20:39:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

QM0AAC14AG03RM1 CCH3 Citrus clementina genomic clone CCH3019M05, genomic survey sequence.
ET107370.1:305-324

TTGATACAACTACTCTGACTGCAGCAACTA305ATAGCAATGGTGAAAGCGGTGAAAGCGCATCTGCAATTAAGGATAATATA

Felis catus Senzu DNA, chromosome: A1, American Shorthair breed.
AP023152.1:20371280-20371299

CTCCCTAAAATCAAGTACAAGACAAGAACG20371280ACCGCTTTCACCATTGCTATCATACATTACTGGAAACCCTGGCTAAAGTA

Citrus sinensis genome assembly, chromosome: 7.
OY754324.1:20425314-20425333

TATATTATCCTTAATTGCAGATGCGCTTTC20425314ACCGCTTTCACCATTGCTATTAGTTGCTGCAGTCAGAGTAGTTGTATCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.143 | 0.135 | search_plus_done; http://172.18.8.135:50400/match?q=ATAGCAATGGTGAAAGCGGT&k=0&no_gap=0&offset=0&limit=50
0.169 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=ACCGCTTTCACCATTGCTAT&k=0&no_gap=0&offset=0&limit=49
0.170 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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