GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:19:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GQ03102.B7.1_B21 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03102_B21 5', mRNA sequence.
EX343834.1:476-495
ACATGAATAACTTATCTTTTGATCGTAATG476ATAGTGTTTTTGGAGTAGCAGGGAATGGTTCCTTGTTGAATCCACATTCT
GQ03102.B7_B21 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03102_B21 5', mRNA sequence.
EX344207.1:475-494
ACATGAATAACTTATCTTTTGATCGTAATG475ATAGTGTTTTTGGAGTAGCAGGGAATGGTTCCTTGTTGAATCCACATTCT
GQ03109.B7_J17 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03109_J17 5', mRNA sequence.
EX350831.1:476-495
ACATGAATAACTTATCTTTTGATCGTAATG476ATAGTGTTTTTGGAGTAGCAGGGAATGGTTCCTTGTTGAATCCACATTCT
TSA: Abies alba contig18335.Aaseedling mRNA sequence.
JV154850.1:399-418
GCATGAATAACTTATCTTTTGATCATAATG399ATAGTGTTTTTGGAGTAGCAGGGAATGGTTCTCTATTGAATCCACATTCT
Picea glauca clone GQ03109_J17 mRNA sequence.
BT107579.1:476-495
ACATGAATAACTTATCTTTTGATCGTAATG476ATAGTGTTTTTGGAGTAGCAGGGAATGGTTCCTTGTTGAATCCACATTCT
Leucophora obtusa genome assembly, chromosome: 1.
OX465295.1:58676912-58676931
CTTTCATGCATGTCATGTGCGGTTAAGTTT58676912ATAGTGTTTTTGGAGTAGCACTTGTACTTTCATTTGACAGTTTTATGTTT
Nomada ruficornis genome assembly, chromosome: 14.
OX637859.1:9368854-9368873
GGGAAAGGACTGGAGTGGTGTGGTGTGATA9368854ATAGTGTTTTTGGAGTAGCAGAGTAGTGACGGTTGGTGGCCCGTGGAGTA
RTNIT1_18_D02.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone RTNIT1_18_D02_A029 3', mRNA sequence.
DR059508.1:305-324
AGAATGTGGATTCAACAAGGAACCATTCCC305TGCTACTCCAAAAACACTATCATTATGATCAAAAGATAGGTTATTCATGT
GQ03102.SP6_B21 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03102_B21 3', mRNA sequence.
EX344920.1:733-752
AGAATGTGGATTCAACAAGGAACCATTCCC733TGCTACTCCAAAAACACTATCATTACGATCAAAAGATAAGTTATTCATGT
GQ03109.SP6_J17 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03109_J17 3', mRNA sequence.
EX351188.1:733-752
AGAATGTGGATTCAACAAGGAACCATTCCC733TGCTACTCCAAAAACACTATCATTACGATCAAAAGATAAGTTATTCATGT
Tridacna gigas genome assembly, chromosome: 4.
OX244031.2:69136317-69136336
TTTCATCTAGAAATATGTTTTAAGATTAGA69136317TGCTACTCCAAAAACACTATGGACAAGGAAAAGCTTCTGTTAAAATTGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATAGTGTTTTTGGAGTAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATAGTGTTTTTGGAGTAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.290 | 0.281 | search_plus_done; http://172.18.8.135:50400/match?q=ATAGTGTTTTTGGAGTAGCA&k=0&no_gap=0&offset=0&limit=50
0.464 | 0.174 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTACTCCAAAAACACTAT&k=0&no_gap=0&offset=0&limit=43
0.467 | 0.003 | cgi_end;

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