GGGenome | Results

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2025-04-08 16:06:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

py593 PY Sporophyte cDNA Library Pyropia yezoensis cDNA, mRNA sequence.
CX874353.1:92-111

ACAAAAAGACTCTCGTGGCACTCGCTCGAC92ATATCTATGGCTGCCACGGTGGCCGCTGGCGCCAACCCGCCTCCACCAGG

py801 PY Sporophyte cDNA Library Pyropia yezoensis cDNA, mRNA sequence.
CX874522.1:80-99

ACAAAAAGACTCTCGTGGCACTCGCTCGAC80ATATCTATGGCTGCCACGGTGGCCGCTGGCGCCAACCCGCCTCCACCAGG

pyF4 PY Sporophyte cDNA Library Pyropia yezoensis cDNA, mRNA sequence.
CX874580.1:91-110

ACAAAAAGACTCTCGTGGCACTCGCTCGAC91ATATCTATGGCTGCCACGGTGGCCGCTGGCGCCAACCCGCCTCCACCAGG

Porphyra yezoensis cDNA, clone:PFL073a08_r, 5'end.
AU195299.1:214-233

CCTGGTGGAGGCGGGCTGGCGCCAGCGGCC214ACCGTGGCAGCCATAGATATGTCGAGCGAGTGCCACGAGAGTCTTTTTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.197 | 0.188 | search_plus_done; http://172.18.8.135:50400/match?q=ATATCTATGGCTGCCACGGT&k=0&no_gap=0&offset=0&limit=50
0.229 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=ACCGTGGCAGCCATAGATAT&k=0&no_gap=0&offset=0&limit=47
0.230 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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