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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:44:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RTDR2_8_F04.g1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_8_F04_A021 5', mRNA sequence.
CF389621.1:167-186
TTACACCGTGCAAGTGATGAATTTATCTCC167ATATGCAACAGAAGAGATTGTCAGAGATTTCTTCTCCCACTCTGGAACTG
RTCNT1_2_E04.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_2_E04_A029 5', mRNA sequence.
CF663413.1:31-50
TTACACCGTGCAAGTGATGAATTTATCTCC31ATATGCAACAGAAGAGATTGTCAGAGATTTCTTCTCCCACTCTGGAACTG
FLD1_16_B02.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_16_B02_A029 5', mRNA sequence.
CO159858.1:218-237
TTACACCGTGCAAGTGATGAATTTATCTCC218ATATGCAACAGAAGAGATTGTCAGAGATCTCTTCTCCCACTCTGGAACTG
RTNACL1_42_H06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_42_H06_A029 5', mRNA sequence.
CV035856.1:268-287
TTACACCGTGCAAGTGATGAATTTATCTCC268ATATGCAACAGAAGAGATTGTCAGAGATTTCTTCTCCCACTCTGGAACTG
STRR1_39_A07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_39_A07_A033 5', mRNA sequence.
DR098150.1:172-191
TTACACCGTGCAAGTGATGAATTTATCTCC172ATATGCAACAGAAGAGATTGTCAGAGATTTCTTCTCCCACTCTGGAACTG
PCO0139.C21_H09 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0139_H09 5', mRNA sequence.
GT239901.1:186-205
TTACACCGTGCAAGTGATGAATTTATCTCC186ATATGCAACAGAAGAGATTGTCAGAGATTTCTTCTCCCACTCTGGAACTG
PBA0114.C21_N10 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0114_N10 5', mRNA sequence.
GW747420.1:218-237
TTACACCGTGCAAGTGATGAACTTATCTCC218ATATGCAACAGAAGAGATTGTCAGAGATTTCTTCTCCCACTCTGGAACTG
PBA0119.C21_F02 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0119_F02 5', mRNA sequence.
GW750780.1:274-293
TTACACCGTGCAAGTGATGAATTTATCTCC274ATATGCAACAGAAGAGATTGTCAGAGATTTCTTCTCCCACTCTGGAACTG
PBA0119.C21_J22 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0119_J22 5', mRNA sequence.
GW750890.1:284-303
TTACACCGTGCAAGTGATGAATTTATCTCC284ATATGCAACAGAAGAGATTGTCAGAGATTTCTTCTCCCACTCTGGAACTG
Acholoe squamosa genome assembly, chromosome: 11.
OX439045.1:35079468-35079487
AGTCTTCAGAAGGGGTGCTATATATATCCA35079468ATATGCAACAGAAGAGATTGGATTCGGGCCACAGCAAGGCTCAGCAACCT
Acholoe squamosa genome assembly, chromosome: 11.
OX439045.1:44567796-44567815
TGGAAGTCTTCAGAAGGGGTGCTATATCAA44567796ATATGCAACAGAAGAGATTGGATTCGGGCCACAGCAAGGCTCAGCAACCT
RTNACL1_38_D07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_38_D07_A029 3', mRNA sequence.
CV034030.1:546-565
CAGTTCCAGAGTGGGAGAAGAAATCTCTGA546CAATCTCTTCTGTTGCATATGGAGATAAATTCATCACTTGCACGGTGTAA
STRS1_71_D10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_71_D10_A034 3', mRNA sequence.
DR025356.1:647-666
CAGTTCCAGAGTGGGAGAAGAAATCTCTGA647CAATCTCTTCTGTTGCATATGGAGATAAATTCATCACTTGCACGGTGTAA
STRR1_18_B06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_18_B06_A033 3', mRNA sequence.
DR094980.1:861-880
CAGTTCCAGAGTGGGAGAAGAAATCTCTGA861CAATCTCTTCTGTTGCATATGGAGATAAATTCATCACTTGCACGGGTAAT
Agrypnus murinus genome assembly, chromosome: 3.
OV816026.1:33907181-33907200
TACTAAGTTTGTTGCTGCCACAAAATTACA33907181CAATCTCTTCTGTTGCATATAGCATTGTATAATTTGTTTTCATACTTCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATATGCAACAGAAGAGATTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATATGCAACAGAAGAGATTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.654 | 0.645 | search_plus_done; http://172.18.8.135:50400/match?q=ATATGCAACAGAAGAGATTG&k=0&no_gap=0&offset=0&limit=50
0.882 | 0.228 | search_minus_done; http://172.18.8.135:50400/match?q=CAATCTCTTCTGTTGCATAT&k=0&no_gap=0&offset=0&limit=39
0.885 | 0.003 | cgi_end;

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