GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 07:57:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 4594 from Patent WO2009037279.
GN099813.1:600-622
GCCAATATTTTGAACTACTTTTTTGCCAAA600ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCTGC
Sequence 7842 from Patent EP2194140.
HC897690.1:600-622
GCCAATATTTTGAACTACTTTTTTGCCAAA600ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCTGC
Sequence 7888 from Patent EP2194140.
HC897736.1:611-633
GCCAATGTGTTGAATTACTTTTTTGCCAAA611ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCAGC
Sequence 4594 from patent US 8664475.
HK289037.1:600-622
GCCAATATTTTGAACTACTTTTTTGCCAAA600ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCTGC
Sequence 7842 from patent US 8952217.
HK424579.1:600-622
GCCAATATTTTGAACTACTTTTTTGCCAAA600ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCTGC
Sequence 7888 from patent US 8952217.
HK424602.1:611-633
GCCAATGTGTTGAATTACTTTTTTGCCAAA611ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCAGC
Sequence 34293 from patent US 8952217.
HK437639.1:600-622
GCCAATATTTTGAACTACTTTTTTGCCAAA600ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCTGC
Sequence 34339 from patent US 8952217.
HK437662.1:611-633
GCCAATGTGTTGAATTACTTTTTTGCCAAA611ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCAGC
Sequence 57661 from patent US 8952217.
HK449189.1:600-622
GCCAATATTTTGAACTACTTTTTTGCCAAA600ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCTGC
Sequence 57707 from patent US 8952217.
HK449212.1:611-633
GCCAATGTGTTGAATTACTTTTTTGCCAAA611ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCAGC
NF054F11FL1F1095 Developing flower Medicago truncatula cDNA clone NF054F11FL 5', mRNA sequence.
BI270534.1:56-78
GCCAATGTGTTGAATTACTTTTTTGCCAAA56ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCAGC
64C07 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence.
GW868453.1:670-692
GCCAACTTGATCAACTATGGCACTGCCAAG670ATCAAAGGTGGATGGGGATGGAGACTATCGCTGGGTCTGGCGGGAGTTCCAGC
Ipa.ADAB-aad08h09.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence.
GW968536.1:80-102
GCGAATGTGCTCAACTACTTCTTCGCAAAA80ATCAAAGGTGGATGGGGATGGAGGCTTAGATTGGGTGGT
TSA: Vicia faba contig04491.VifaIA mRNA sequence.
JR968593.1:138-160
GGCCAATATTTTGAACTACTTTTTGCCAAA138ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCTGC
Medicago truncatula clone mth2-32m20, complete sequence.
AC146792.27:72617-72639
GCCAATGTGTTGAATTACTTTTTTGCCAAA72617ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCAGC
Medicago sativa sugar transporter-like mRNA, partial sequence.
AF537206.1:116-138
GCCAATGTATTGAACTACTTTTTTGCCAAA116ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCAGC
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:3432320-3432342
GAGCATGTGCTCAACTACTTCTTCGTAAAT3432320ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTTGGTGGCGCAATAGTCTCTGC
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:3444004-3444026
GCGAATGTACTCAACTACTTCTTTGCAAAT3444004ATCAAAGGTGGATGGGGATGGAGGCTTAGTTTTGGTGGCGCAATGGTCTCTGC
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:3445014-3445036
GCGAATGTGCTCAACTACTTCTTCGCAAAT3445014ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTTGGTGGCGCAATGGTCTCTGC
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:3447393-3447415
GCGAATGTGCTCAACTACTTCTTCGCAAAT3447393ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTTGGTGGTGCAATGGTCTCTGC
Arachis hypogaea cultivar Shitouqi chromosome B02.
CP030994.1:117272240-117272262
GCGAATGTGCTCAACTACTTCTTCGCAAAA117272240ATCAAAGGTGGATGGGGATGGAGGCTTAGTTTGGGTGGTGCAATGGTCCCTGC
Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:116707884-116707906
GCGAATGTACTCAACTACTTCTTCGCAAAT116707884ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTTGGTGGTGCAATGGTCTCTGC
Arachis hypogaea cultivar Shitouqi chromosome B08.
CP031000.1:124098583-124098605
GCGAATGTCCTCAACTACTTCTTCGCAAAT124098583ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTGGGTGGTACAATGGTCTCTGC
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:3427313-3427335
GAGCATGTGCTCAACTACTTCTTCGTAAAT3427313ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTTGGTGGCGCAATAGTCTCTGC
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:3438987-3439009
GCGAATGTACTCAACTACTTCTTTGCAAAT3438987ATCAAAGGTGGATGGGGATGGAGGCTTAGTTTTGGTGGCGCAATGGTCTCTGC
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:3440003-3440025
GCGAATGTGCTCAACTACTTCTTCGCAAAT3440003ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTTGGTGGCGCAATGGTCTCTGC
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:3442379-3442401
GCGAATGTGCTCAACTACTTCTTCGCAAAT3442379ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTTGGTGGTGCAATGGTCTCTGC
Arachis ipaensis cultivar K30076 chromosome 02.
CP049893.1:116697714-116697736
GCGAATGTGCTCAACTACTTCTTCGCAAAA116697714ATCAAAGGTGGATGGGGATGGAGGCTTAGTTTGGGTGGTGCAATGGTCCCTGC
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:129467920-129467942
GCGAATGTACTCAACTACTTCTTCGCAAAT129467920ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTTGGTGGTGCAATGGTCTCTGC
Arachis ipaensis cultivar K30076 chromosome 08.
CP049899.1:121379966-121379988
GCGAATGTGCTCAACTACTTCTTCGCAAAT121379966ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTGGGTGGTACAATGGTCTCTGC
Arachis ipaensis cultivar K30076 chromosome 09.
CP049900.1:1007504-1007526
GCGAATGTGCTCAACTACTTCTTCGCAAAT1007504ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTTGGTGGCGCAATGGTCTCTGC
Arachis ipaensis cultivar K30076 chromosome 09.
CP049900.1:1008841-1008863
GCGAATGTGCTCAACTACTTCTTCGCAAAT1008841ATCAAAGGTGGATGGGGATGGAGGCTTAGCTTTGGTGGTGTAATGGTCTCTGC
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:45270303-45270325
GCCAATGTTTTGAACTACTTTTTTGCCAAA45270303ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCCGC
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:42064217-42064239
GCCAATGTGTTGAACTACTTTTTTGCCAAA42064217ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCTGC
Trifolium repens isolate ACLI19 chromosome 07_0cc.
CP125848.1:6154788-6154810
GCCAATGTGTTGAACTATTTTTTTAACAAA6154788ATCAAAGGTGGATGGGGATGGAGGTTAAGTTTAGGTGGTGCTATGGTCCCTGC
Glycine max cultivar Williams 82 chromosome 10.
CP126435.1:51404886-51404908
GCTGACTATTGTTGATCGAGCAACAACTGA51404886ATCAAAGGTGGATGGGGATGGAGGCTATCTCTAGGTTTGGGTGGTTTACCAGC
Medicago arabica genome assembly, chromosome: 1.
OX326964.1:54751221-54751243
GCCAATGTATTGAACTACTTTTTTGCCAAA54751221ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGAGCTATGGTCCCAGC
Medicago arabica genome assembly, chromosome: 6.
OX326969.1:23710451-23710473
GCCAGTGTGTTGAACTACTTTTCTAACAAA23710451ATCAAAGGTGGATGGGGATGGAGGTTAAGTTTAGGTGGTGCTATAGTCCCAAT
Trifolium dubium genome assembly, chromosome: 9.
OX638070.1:6280356-6280378
GCCAATGTGTTGAACTACTTTTTTGCCAAA6280356ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCGATGGTCCCCGC
Medicago truncatula sugar tranporter mRNA, complete cds.
U38651.1:611-633
GCCAATGTGTTGAATTACTTTTTTGCCAAA611ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCAGC
V.faba mRNA for hexose transporter.
Z93775.1:600-622
GCCAATATTTTGAACTACTTTTTTGCCAAA600ATCAAAGGTGGATGGGGATGGAGATTGAGTTTAGGTGGTGCTATGGTCCCTGC
TSA: Arachis hypogaea Ahy.Unigene379 mRNA sequence.
JR541084.1:877-899
GCAGGGACCATTGCACCACCCAAACTAAGC877CTCCATCCCCATCCACCTTTGATCTTTGCGAAAAAGTAGTTGAGCACATTCGC
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:127058702-127058724
GCAGGGACCATTGCACCACCTAAACTAAGC127058702CTCCATCCCCATCCACCTTTGATCTTTGCGAAAAAGTAGTTGAGCACATTCGC
Arachis hypogaea cultivar Shitouqi chromosome B06.
CP030998.1:14436501-14436523
GCAGAGACCATTGCACCACCAAAGCTAAGC14436501CTCCATCCCCATCCACCTTTGATATTTGCGAAGAAGTAGTTGAGCACATTCGC
Arachis hypogaea cultivar Shitouqi chromosome B06.
CP030998.1:14437842-14437864
GCAGAGACCATTGCGCCACCAAAGCTAAGC14437842CTCCATCCCCATCCACCTTTGATATTTGCGAAGAAGTAGTTGAGCACATTCGT
Arachis hypogaea cultivar Shitouqi chromosome B06.
CP030998.1:14439898-14439920
GCAGAGACCATTGCGCCACCAAAGCTAAGC14439898CTCCATCCCCATCCACCTTTGATATTTGCGAAGAAGTAGTTGAGCACATTCGC
Arachis hypogaea cultivar Shitouqi chromosome B09.
CP031001.1:699620-699642
GCAGAGACCATTACACCACCAAAGCTAAGC699620CTCCATCCCCATCCACCTTTGATATTTGCGAAGAAGTAGTTGAGCACATTCGC
Arachis hypogaea cultivar Shitouqi chromosome B09.
CP031001.1:700957-700979
GCAGAGACCATTGCGCCACCAAAGCTAAGC700957CTCCATCCCCATCCACCTTTGATATTTGCGAAGAAGTAGTTGAGCACATTCGC
Arachis ipaensis cultivar K30076 chromosome 06.
CP049897.1:11029246-11029268
GCAGAGACCATTGCACCACCAAAGCTAAGC11029246CTCCATCCCCATCCACCTTTGATATTTGCGAAGAAGTAGTTGAGCACATTCGC
Arachis ipaensis cultivar K30076 chromosome 06.
CP049897.1:11030586-11030608
GCAGAGACCATTGCGCCACCAAAGCTAAGC11030586CTCCATCCCCATCCACCTTTGATATTTGCGAAGAAGTAGTTGAGCACATTCGT
Arachis ipaensis cultivar K30076 chromosome 06.
CP049897.1:11032639-11032661
GCAGAGACCATTGCGCCACCAAAGCTAAGC11032639CTCCATCCCCATCCACCTTTGATATTTGCGAAGAAGTAGTTGAGCACATTCGC
Vicia faba genome assembly, chromosome: 6.
OX451741.1:892359446-892359468
GCAGGGACCATAGCACCACCTAAACTCAAT892359446CTCCATCCCCATCCACCTTTGATTTTGGCAAAAAAGTAGTTCAAAATATTGGC
Oldenlandia corymbosa var. corymbosa genome assembly, chromosome: 1.
OX459118.1:37460319-37460341
GCTGGTACAGCAGCCATTGCCAGGGATATT37460319CTCCATCCCCATCCACCTTTGATTTTTTCACTCCCATAATTGATTAGGTTTGC
Trifolium subterraneum genome assembly, chromosome: 1.
OX637461.1:16240275-16240297
GCGGGGACCATAGCACCACCTAAACTCAAT16240275CTCCATCCCCATCCACCTTTGATTTTAGCAAAAAAGTAGTTCAAAACATTGGC
Trifolium dubium genome assembly, chromosome: 10.
OX638071.1:10615537-10615559
GCGGGGACCATCGCACCACCTAAACTCAAT10615537CTCCATCCCCATCCACCTTTGATTTTGGCAAAAAAGTAGTTCAACACATTGGC
Trifolium dubium genome assembly, chromosome: 14.
OX638075.1:9435066-9435088
GCGGGGACCATCGCACCACCCAAACTCAAT9435066CTCCATCCCCATCCACCTTTGATTTTGGCAAAAAAGTAGTTCAACACATTGGC
Medicago lupulina genome assembly, chromosome: 4.
OY283142.1:14447954-14447976
GCTGGGACCATAGCACCACCTAAACTCAAT14447954CTCCATCCCCATCCACCTTTGATTTTGGCAAAAAAGTAGTTCAATACATTGGC
Viola odorata genome assembly, chromosome: 6.
OY829542.1:61426440-61426462
GCAGGGACAGCAGCAAGCCCCAAAGAAACT61426440CTCCATCCCCATCCACCTTTGATCGTTGTTGTTCCAAGATTGATGAGATTTGC
Erodium maritimum genome assembly, chromosome: 2.
OY997589.1:28430931-28430953
GCGGGCACGAGGGCCCCACCCAGGCTCAGC28430931CTCCATCCCCATCCACCTTTGATCTTCGCGAAAAAGTAGTTGAGCACATTCGC
Sepiola atlantica genome assembly, chromosome: 17.
OY744531.1:1727638-1727660
TTATTAGTTTTTGATTTTATTGCATTTTAT1727638CTCCATCCCCATCCACCTTTGATACCTTTTGATATTTCTTTTTACCACCAGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCAAAGGTGGATGGGGATGGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCAAAGGTGGATGGGGATGGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.706 | 0.698 | search_plus_done; http://172.18.8.135:50400/match?q=ATCAAAGGTGGATGGGGATGGAG&k=0&no_gap=0&offset=0&limit=50
0.766 | 0.060 | search_minus_done; http://172.18.8.135:50400/match?q=CTCCATCCCCATCCACCTTTGAT&k=0&no_gap=0&offset=0&limit=9
0.779 | 0.012 | cgi_end;

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