GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 14:02:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Nemoura dubitans genome assembly, chromosome: 2.
OV121075.1:27997568-27997587
AGTAGAGTTGTCAGCTGTTTTGGAGACTGG27997568ATCAACCGCATCACGTTTTTTGGGGGTAACGCTTCACACTCCAAGTACCG
Trifolium repens mRNA, clone: WCC11j07_006, unspecified EST.
FY458021.1:436-455
CCCATTTGAGGAATGTTACTGAAAATGGAA436AAAAACGTGATGCGGTTGATAAAGTTGGAAACTTGTTTTTAGGGAAAAAT
Xanthomonas dyei strain 22-321 chromosome, complete genome.
CP103837.1:4952890-4952909
GGCTCCTGCAAATGATGATCGATATCAGGG4952890AAAAACGTGATGCGGTTGATGGAACGTCGCGAGCGGCCACGCAGTGATTG
Xanthomonas dyei strain 22-325 chromosome, complete genome.
CP103840.1:4952999-4953018
GGCTCCTGCAAATGATGATCGATATCAGGG4952999AAAAACGTGATGCGGTTGATGGAACGTCGCGAGCGGCCACGCAGTGATTG
Tipula confusa genome assembly, chromosome: 2.
OY744476.1:164863168-164863187
AAATCAATGACAAGCACACCGTGTCACAAA164863168AAAAACGTGATGCGGTTGATTATACCAGTATGATATTATATGCTCTACGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCAACCGCATCACGTTTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCAACCGCATCACGTTTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.179 | 0.170 | search_plus_done; http://172.18.8.135:50400/match?q=ATCAACCGCATCACGTTTTT&k=0&no_gap=0&offset=0&limit=50
0.372 | 0.193 | search_minus_done; http://172.18.8.135:50400/match?q=AAAAACGTGATGCGGTTGAT&k=0&no_gap=0&offset=0&limit=49
0.375 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).