GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Reaumuria trigyna Unigene19524_C21 mRNA sequence.
JR250336.1:723-744

CCTCCGATCTTCAAGGTCTGATATTTCATC723ATCAACCTCATCCTCACTATCCCTATCGGATAGCACCTCTTCCAATGCCATT

TSA: Pyrus x bretschneideri Unigene16616_XinShao mRNA sequence.
JR611471.1:494-515

CCTTCGATCTTCAAGATCAGCAACATCATC494ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATT

TSA: Vitis vinifera Locus_14069_Transcript_2/3_Confidence_0.625.Vivi mRNA sequence.
KA156079.1:2020-2041

CCTTCGATCTTCAAAATCTGCAATGTCATC2020ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC

TSA: Vitis vinifera Locus_14069_Transcript_3/3_Confidence_0.625.Vivi mRNA sequence.
KA156080.1:610-631

CCTTCGATCTTCAAAATCTGCAATGTCATC610ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC

PP_LBa0043-J14.R PP_LBa Prunus persica genomic 3', genomic survey sequence.
FI961755.1:386-407

CCTTCGATCCTCAAAATCAGCAACATCATC386ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAATGTCATT

Vitis vinifera contig VV78X127056.15, whole genome shotgun sequence.
AM447481.2:7534-7555

CCTTCGATCTTCAAAATCTGCAATGTCATC7534ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC

Papaver somniferum cultivar Roxanne chromosome 2.
CP048214.1:264784028-264784049

CCTTCGATCTTCAAAGTCAGCAATGTCATC264784028ATCAACCTCATCCTCACTATCCCGATCAGACAACACTTGCTCCATTGACATT

Vitis rotundifolia cultivar Noble chromosome 2.
CP092927.1:5633133-5633154

CCTTCGATCTTCAAAATCTGCAATGTCATC5633133ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC

Vitis vinifera cultivar Pinot Noir 40024 chromosome 2.
CP126649.1:6126582-6126603

CCTTCGATCTTCAAAATCTGCAATGTCATC6126582ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC

Vitis x doaniana cultivar PI 588149 chromosome 2.
CP128328.1:5971879-5971900

CCTTCGATCTTCAAAATCTGCAATGTCATC5971879ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC

Vitis x doaniana cultivar PI 588149 chromosome 2.
CP128347.1:6063758-6063779

CCTTCGATCTTCAAAATCTGCAATGTCATC6063758ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:37311518-37311539

CCTTCGATCTTCAAGATCAGCAACATCATC37311518ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:37344609-37344630

CCTTCGATCTTCAAGATCAGCAACATCATC37344609ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:37406864-37406885

CCTTCGATCTTCAAGATCAGCAACATCATC37406864ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:37464974-37464995

CCTTCGATCTTCAAGATCAGCAACATCATC37464974ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:37808769-37808790

CCTTCGATCTTCAAGATCAGCAACATCATC37808769ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:37844981-37845002

CCTTCGATCTTCAAGATCAGCAACATCATC37844981ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:38672484-38672505

CCTTCGATCTTCAAGATCAGCAACATCATC38672484ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:38708575-38708596

CCTTCGATCTTCAAGATCAGCAACATCATC38708575ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:37715600-37715621

CCTTCGATCTTCAAGATCAGCAACATCATC37715600ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:37773711-37773732

CCTTCGATCTTCAAGATCAGCAACATCATC37773711ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:35671622-35671643

CCTTCGATCTTCAAGATCAGCAACATCATC35671622ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:35704212-35704233

CCTTCGATCTTCAAGATCAGCAACATCATC35704212ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Vitis vinifera cv. PN40024, annotated scaffold_1675.assembly12x.
FN596630.1:3971-3992

CCTTCGATCTTCAAAATCTGCAATGTCATC3971ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC

Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:37490999-37491020

CCTTCGATCTTCAAGATCAGCAACATCATC37490999ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:37525449-37525470

CCTTCGATCTTCAAGATCAGCAACATCATC37525449ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus domestica genome assembly, chromosome: 11.
OU696687.1:37846536-37846557

CCTTCGATCTTCAAGATCAGCAACATCATC37846536ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus domestica genome assembly, chromosome: 11.
OU696687.1:37904639-37904660

CCTTCGATCTTCAAGATCAGCAACATCATC37904639ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus domestica genome assembly, chromosome: 11.
OU744552.1:37809137-37809158

CCTTCGATCTTCAAGATCAGCAACATCATC37809137ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus domestica genome assembly, chromosome: 11.
OU744552.1:37848590-37848611

CCTTCGATCTTCAAGATCAGCAACATCATC37848590ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus domestica genome assembly, chromosome: 11.
OU744963.1:37042261-37042282

CCTTCGATCTTCAAGATCAGCAACATCATC37042261ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus domestica genome assembly, chromosome: 11.
OU744963.1:37100364-37100385

CCTTCGATCTTCAAGATCAGCAACATCATC37100364ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus domestica genome assembly, chromosome: 11.
OU745001.1:38544157-38544178

CCTTCGATCTTCAAGATCAGCAACATCATC38544157ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Malus domestica genome assembly, chromosome: 11.
OU745001.1:38578614-38578635

CCTTCGATCTTCAAGATCAGCAACATCATC38578614ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Vitis vinifera 5-prime EST SS0ACG23YK16FM1.
FQ455659.1:742-763

GATGGCTTTAGATCAAGTATTGTCAGATCG742GGATAGTGAGGATGAGGTTGATGATGACATTGCAGATTTTGAAGATCGAAGG

Vitis vinifera 5-prime EST SS0ACG55YI18FM1.
FQ460762.1:742-763

GATGGCTTTAGATCAAGTATTGTCAGATCG742GGATAGTGAGGATGAGGTTGATGATGACATTGCAGATTTTGAAGATCGAAAG

TSA: Reaumuria trigyna Unigene66832_T43 mRNA sequence.
JR260266.1:8-29

CCGATAG8GGATAGTGAGGATGAGGTTGATGATGAAATATCAGATCTTGAAGATCGGAGG

Prunus dulcis DNA, pseudomolecule Pd04.
AP019300.1:8882472-8882493

AATGACATTGGAACAAGTTTTGTCAGATCA8882472GGATAGTGAGGATGAGGTTGATGATGATGTTGCTGATTTTGAGGATCGAAGG

Vitis vinifera cv. PN40024, annotated scaffold_234.assembly12x.
FN595528.1:75386-75407

GATGGCTTTAGATCAAGTATTGTCAGATCG75386GGATAGTGAGGATGAGGTTGATGATGACATTGCAGATTTTGAAGATCGAAGG

Prunus dulcis cultivar Desmayo Largueta EMBRYONIC FLOWER 2 (EMF2) mRNA, complete cds.
MN309827.1:1599-1620

AATGACATTGGAACAAGTTTTGTCAGATCA1599GGATAGTGAGGATGAGGTTGATGATGATGTTGCTGATTTTGAGGATCGAAGG

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:3807968-3807989

GATGATATTGGAACAAGTTTTGTCAGATCA3807968GGATAGTGAGGATGAGGTTGATGATGATGTTGCTGATCTTGAAGATCGAAGG

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:3855944-3855965

GATGATGTTGGAACAAGTTTTGTCAGATCA3855944GGATAGTGAGGATGAGGTTGATGATGATGTTGCTGATCTTGAAGATCGAAGG

Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:4198841-4198862

AATGATGTTGGAACAAGTTTTGTCAGATCA4198841GGATAGTGAGGATGAGGTTGATGATGACGTTGCTGATCTTGAAGATCGAAGG

Pyrus communis genome assembly, chromosome: 8.
OY757075.1:2791570-2791591

AATGATGTTGGAACAAGTTTTGTCAGATCA2791570GGATAGTGAGGATGAGGTTGATGATGATGTTGCTGATCTTGAAGATCGAAGG

Dryas octopetala genome assembly, chromosome: 1.
OY992832.1:11413914-11413935

AATGGCGTTGGAACAAGTTTTGTCAGATCA11413914GGATAGTGAGGATGAGGTTGATGACGATGTTGCTGATTTTGAAGATCGAAGG

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Debug Info:

0.009 | 0.009 | search_start;
0.266 | 0.257 | search_plus_done; http://172.18.8.135:50400/match?q=ATCAACCTCATCCTCACTATCC&k=0&no_gap=0&offset=0&limit=50
0.477 | 0.211 | search_minus_done; http://172.18.8.135:50400/match?q=GGATAGTGAGGATGAGGTTGAT&k=0&no_gap=0&offset=0&limit=15
0.485 | 0.008 | cgi_end;

Summary:

Results:

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