GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 15:26:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Vicia faba genome assembly, chromosome: 5.
OX451740.1:826681830-826681849
GCATCAAGACATCAATACTCATCAAAATTC826681830ATCAATCCCCATCATACATCAATCATACATTCTCAATTCACAAACAAGAC
Vicia faba genome assembly, chromosome: 6.
OX451741.1:727695592-727695611
GCATCAAGGCATCAATATTCATCAAAATTC727695592ATCAATCCCCATCATACATCAATCATATATTCTCAATTCAAGAACAAAAC
KBrH101L08R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH101L08, genomic survey sequence.
DU118149.1:745-764
GGTGTATTGTAATTTGTTTGTTTATATTAT745GATGTATGATGGGGATTGATAACGTAGTTTATTAGGTAGGGCTTTGGTAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence.
AC241104.1:30502-30521
GGTGTATTGTAATTTGTTTGTTTATATTAT30502GATGTATGATGGGGATTGATAACGTAGTTTATTAGGTAGGGCTTTGGTAC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:10677883-10677902
GGTGTATTGTGATTTGTTTGTTTATATTAT10677883GATGTATGATGGGGATTGATAACGTAGTTTATTAGGTAGGGCTTTGGTAC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:10603451-10603470
GGTGTATTGTAATTTGTTTGTTTATATTAT10603451GATGTATGATGGGGATTGATAACGTAGTTTATTAGGTAGGGCTTTGGTAC
Brassica rapa genome, scaffold: A03.
LR031572.1:10455707-10455726
GGTGTATTGTGATTTGTTTGTTTATATTAT10455707GATGTATGATGGGGATTGATAACGTAGTTTATTAGGTAGGGCTTTGGTAC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:10580255-10580274
GGTGTATTGTGATTTGTTTGTTTATATTAT10580255GATGTATGATGGGGATTGATAACGTAGTTTATTAGGTAGGGCTTTGGTAC
Ilex aquifolium genome assembly, chromosome: 2.
OX637392.1:25619665-25619684
GTTTGTGCAATGCCTCGGGAACTTTTCAAA25619665GATGTATGATGGGGATTGATGAGTGGGTTTTATACCTACGAATTGAGTAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCAATCCCCATCATACATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCAATCCCCATCATACATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.174 | 0.165 | search_plus_done; http://172.18.8.135:50400/match?q=ATCAATCCCCATCATACATC&k=0&no_gap=0&offset=0&limit=50
0.270 | 0.096 | search_minus_done; http://172.18.8.135:50400/match?q=GATGTATGATGGGGATTGAT&k=0&no_gap=0&offset=0&limit=48
0.275 | 0.005 | cgi_end;

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