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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 20:59:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Raphanus sativus mRNA, clone: RSCR06M04, 5' end sequence.
FY441737.1:346-365
CCCTCTGCCAGCATCTAGTGGCGATCGGGG346ATCACAACGAGTACGAGGGGGTGGTCTCAGCCATCCAACACCGTCAATCG
Raphanus sativus mRNA, clone: RSCS07E14, 5' end sequence.
FY448357.1:280-299
CCCTCTGCCAGCATCTAGTGGCGATCGGGG280ATCACAACGAGTACGAGGGGGTGGTCTCAGCCATCCAACACCGTCAATCG
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:26234209-26234228
CCCTCTGCCAGCATCTAGTGGCGATCGGGG26234209ATCACAACGAGTACGAGGGGGTGGTCTCAGCCATCCAACACCGTCAATCG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_16659.
FX666624.1:1742-1761
CGATTGACGGTGTTGGATGGCTGAGACCAC1742CCCCTCGTACTCGTTGTGATCCCCGATCGCCACTAGATGCTGGCAGAGGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_40598.
FX792793.1:1687-1706
CGATTGACGGTGTTGGATGGCTGAGACCAC1687CCCCTCGTACTCGTTGTGATCCCCGATCGCCACTAGATGCTGGCAGAGGG
TSA: Raphanus sativus RS11591 mRNA sequence.
JT796138.1:1354-1373
CGATTGACGGTGTTGGATGGCTGAGACCAC1354CCCCTCGTACTCGTTGTGATCCCCGATCGCCACTAGATGCTGGCAGAGGG
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:2660073-2660092
CGATTGACGGTGTTGGATGGCTGAGACCAC2660073CCCCTCGTACTCGTTGTGATCCCCGATCGCCACTAGATGCTGGCAGAGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCACAACGAGTACGAGGGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCACAACGAGTACGAGGGG | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.330 | 0.321 | search_plus_done; http://172.18.8.135:50400/match?q=ATCACAACGAGTACGAGGGG&k=0&no_gap=0&offset=0&limit=50
0.439 | 0.110 | search_minus_done; http://172.18.8.135:50400/match?q=CCCCTCGTACTCGTTGTGAT&k=0&no_gap=0&offset=0&limit=47
0.442 | 0.003 | cgi_end;

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